Evidence map›Paper›PMID 24979243›Full record

ArticleNature communications2014

Differentiation-dependent requirement of Tsix long non-coding RNA in imprinted X-chromosome inactivation.

Emily Maclary, Emily Buttigieg, Michael Hinten, Srimonta Gayen, Clair Harris, Mrinal Kumar Sarkar, Sonya Purushothaman, Sundeep Kalantry

Open access · bronzeAbstract read
In one paragraph

Article in Nature communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
  2. Genome research · 2025
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  3. Review
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Gene regulation in time and space during X-chromosome inactivation.Nature reviews. Molecular cell biology · 2022
    Review
  12. Article
  13. Highly Resolved Detection of Long Non-coding RNAs In Situ.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Experimental Analysis of Imprinted Mouse X-Chromosome Inactivation.Methods in molecular biology (Clifton, N.J.) · 2018
    Article
  19. Increased expression of antisense lncRNAOncoTargets and therapy · 2018
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Emily MaclaryDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, Michigan 48105, USA.
Emily ButtigiegDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, Michigan 48105, USA.
Michael HintenDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, Michigan 48105, USA.
Srimonta GayenDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, Michigan 48105, USA.
Clair HarrisDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, Michigan 48105, USA.
Mrinal Kumar SarkarDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, Michigan 48105, USA.
Sonya PurushothamanBrody School of Medicine, East Carolina University, Greenville, North Carolina 27834, USA.
Sundeep KalantryDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, Michigan 48105, USA.
University of Michigan · USEast Carolina University · US

Funding

PREDOCTORAL TRAINING IN GENETICST32GM007544 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MORAN, JOHN V. · 1985 to 2022
$11.3M
Initiation of Epigenetic Transcriptional RegulationDP2OD008646 · OD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KALANTRY, SUNDEEP · 2011 to 2011
$2.3M
Career Training in Reproductive BiologyT32HD079342 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Suzanne M MOENTER · 2014 to 2026
$2.3M
Epigenetic Mechanisms of X-chromosome InactivationR00HD055333 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KALANTRY, SUNDEEP · 2009 to 2011
$734k
Epigenetic Mechanisms of X-chromosome InactivationK99HD055333 · NICHD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KALANTRY, SUNDEEP · 2007 to 2008
$164k
NICHD NIH HHS K99 HD055333NICHD NIH HHS R00 HD055333NICHD NIH HHS R00HD055333NICHD NIH HHS T32 HD079342NIGMS NIH HHS #5-T32-GM07544NIGMS NIH HHS T32 GM007544NIH HHS DP2 OD008646NIH HHS DP2-OD-008646-01
6 · The paper itself

Abstract

Imprinted X-inactivation is a paradigm of mammalian transgenerational epigenetic regulation resulting in silencing of genes on the paternally inherited X-chromosome. The preprogrammed fate of the X-chromosomes is thought to be controlled in cis by the parent-of-origin-specific expression of two opposing long non-coding RNAs, Tsix and Xist, in mice. Exclusive expression of Tsix from the maternal-X has implicated it as the instrument through which the maternal germline prevents inactivation of the maternal-X in the offspring. Here, we show that Tsix is dispensable for inhibiting Xist and X-inactivation in the early embryo and in cultured stem cells of extra-embryonic lineages. Tsix is instead required to prevent Xist expression as trophectodermal progenitor cells differentiate. Despite induction of wild-type Xist RNA and accumulation of histone H3-K27me3, many Tsix-mutant X-chromosomes fail to undergo ectopic X-inactivation. We propose a novel model of lncRNA function in imprinted X-inactivation that may also apply to other genomically imprinted loci.

Indexed as

Cell DifferentiationGenomic ImprintingX Chromosome InactivationAnimalsFemaleMaleMiceRNA, Long NoncodingStem CellsTrophoblastsX ChromosomeRNA, Long NoncodingTsix transcript, mouseXIST non-coding RNA

Identifiers

PMID24979243
PMCPMC4086345
OpenAlexW2082384965

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.