Evidence map›Paper›PMID 24978188›Full record

ArticleJournal of clinical pathology2014

Next-generation sequencing reveals frequent consistent genomic alterations in small cell undifferentiated lung cancer.

J S Ross, K Wang, O R Elkadi, A Tarasen, L Foulke, C E Sheehan, G A Otto, G Palmer, R Yelensky, D Lipson and 6 more

Registry-linked trialAbstract read
In one paragraph

Article in Journal of clinical pathology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03419286 (Retrospective Study of Cases of Small Cell Lung Cancer), which is not on this map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03419286 completednot on this mapstarted 2016, after this paper: background citation

Retrospective Study of Cases of Small Cell Lung Cancer (SCLC) That Appeared During Treatment of Another Lung Carcinoma With or Without Oncogenic Activation (TransCPC)

TypeobservationalSponsorUniversity Hospital, GrenobleRan2016 to 2017Enrolled62ConditionsSmall Cell Lung Cancer
3 · Its place in the literature

Who cites it

62 citing papers in PubMed.

  1. Article
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  6. mTOR hyperactivity andPathology oncology research : POR · 2024
    Review
  7. Article
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  10. Article
  11. Review
  12. Article
  13. Molecular Pathology of Lung Cancer.Cold Spring Harbor perspectives in medicine · 2022
    Review
  14. Article
  15. Review
  16. Review
  17. Review
  18. Review
  19. Article
  20. Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

J S Ross
K Wang
O R Elkadi
A Tarasen
L Foulke
C E Sheehan
G A Otto
G Palmer
R Yelensky
D Lipson
J Chmielecki
S M Ali
J Elvin
D Morosini
V A Miller
P J Stephens

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

aimsSmall cell lung cancer (SCLC) carries a poor prognosis, and the systemic therapies currently used as treatments are only modestly effective, as demonstrated by a low 5-year survival at only ∼5%. In this retrospective collected from March 2013 to study, we performed comprehensive genomic profiling of 98 small cell undifferentiated lung cancer (SCLC) samples to identify potential targets of therapy not currently searched for in routine clinical practice.

methodsDNA from 98 SCLC was sequenced to high, uniform coverage (Illumina HiSeq 2500) and analysed for all classes of genomic alterations.

resultsA total of 386 alterations were identified for an average of 3.9 alterations per tumour (range 1–10). Fifty-two (53%) of cases harboured at least 1 actionable alteration with the potential to personalise therapy including base substitutions, amplifications or homozygous deletions in RICTOR (10%), KIT (7%), PIK3CA (6%), EGFR (5%), PTEN (5%), KRAS (5%), MCL1 (4%), FGFR1 (4%), BRCA2, (4%), TSC1 (3%), NF1 (3%), EPHA3 (3%) and CCND1. The most common non-actionable genomic alterations were alterations in TP53 (86% of SCLC cases), RB1 (54%) and MLL2 (17%).

conclusionsGreater than 50% of the SCLC cases harboured at least one actionable alteration. Given the limited treatment options and poor prognosis of patients with SCLC, comprehensive genomic profiling has the potential to identify new treatment paradigms and meet an unmet clinical need for this disease.

Indexed as

Gene Expression ProfilingHigh-Throughput Nucleotide SequencingAdultAgedAged, 80 and overBiomarkers, TumorCell DifferentiationFemaleGenetic Predisposition to DiseaseGenetic TestingHumansLung NeoplasmsMaleMiddle AgedPatient SelectionPhenotypeBiomarkers, Tumor

Identifiers

PMID24978188
PMCPMC4145440

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.