Evidence map›Paper›PMID 24976885›Full record

ArticleStandards in genomic sciences2013

Genome sequence of the Trifolium rueppellianum -nodulating Rhizobium leguminosarum bv. trifolii strain WSM2012.

Wayne Reeve, Vanessa Melino, Julie Ardley, Rui Tian, Sofie De Meyer, Jason Terpolilli, Ravi Tiwari, Ronald Yates, Graham O'Hara, John Howieson and 20 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Standards in genomic sciences, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors.

Wayne ReeveCentre for Rhizobium Studies, Murdoch University, Western Australia, Australia.
Vanessa MelinoCentre for Rhizobium Studies, Murdoch University, Western Australia, Australia.
Julie ArdleyCentre for Rhizobium Studies, Murdoch University, Western Australia, Australia.
Rui TianCentre for Rhizobium Studies, Murdoch University, Western Australia, Australia.
Sofie De MeyerCentre for Rhizobium Studies, Murdoch University, Western Australia, Australia.
Jason TerpolilliCentre for Rhizobium Studies, Murdoch University, Western Australia, Australia.
Ravi TiwariCentre for Rhizobium Studies, Murdoch University, Western Australia, Australia.
Ronald YatesCentre for Rhizobium Studies, Murdoch University, Western Australia, Australia ; Department of Agriculture and Food, Western Australia, Australia.
Graham O'HaraCentre for Rhizobium Studies, Murdoch University, Western Australia, Australia.
John HowiesonCentre for Rhizobium Studies, Murdoch University, Western Australia, Australia.
Mohamed NinawiCentre for Rhizobium Studies, Murdoch University, Western Australia, Australia.
Brittany HeldDOE Joint Genome Institute, Walnut Creek, California, USA.
David BruceDOE Joint Genome Institute, Walnut Creek, California, USA.
Chris DetterDOE Joint Genome Institute, Walnut Creek, California, USA.
Roxanne TapiaDOE Joint Genome Institute, Walnut Creek, California, USA.
Cliff HanDOE Joint Genome Institute, Walnut Creek, California, USA.
Chia-Lin WeiDOE Joint Genome Institute, Walnut Creek, California, USA.
Marcel HuntemannDOE Joint Genome Institute, Walnut Creek, California, USA.
James HanDOE Joint Genome Institute, Walnut Creek, California, USA.
I-Min ChenBiological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Konstantinos MavromatisDOE Joint Genome Institute, Walnut Creek, California, USA.
Victor MarkowitzBiological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Ernest SzetoBiological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Natalia IvanovaDOE Joint Genome Institute, Walnut Creek, California, USA.
Natalia MikhailovaDOE Joint Genome Institute, Walnut Creek, California, USA.
Ioanna PaganiDOE Joint Genome Institute, Walnut Creek, California, USA.
Amrita PatiDOE Joint Genome Institute, Walnut Creek, California, USA.
Lynne GoodwinLos Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
Tanja WoykeDOE Joint Genome Institute, Walnut Creek, California, USA.
Nikos KyrpidesDOE Joint Genome Institute, Walnut Creek, California, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rhizobium leguminosarum bv. trifolii WSM2012 (syn. MAR1468) is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an ineffective root nodule recovered from the roots of the annual clover Trifolium rueppellianum Fresen growing in Ethiopia. WSM2012 has a narrow, specialized host range for N2-fixation. Here we describe the features of R. leguminosarum bv. trifolii strain WSM2012, together with genome sequence information and annotation. The 7,180,565 bp high-quality-draft genome is arranged into 6 scaffolds of 68 contigs, contains 7,080 protein-coding genes and 86 RNA-only encoding genes, and is one of 20 rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Community Sequencing Program.

Indexed as

Alphaproteobacterianitrogen fixationrhizobiaroot-nodule bacteria

Identifiers

PMID24976885
PMCPMC4062638

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.