Evidence map›Paper›PMID 24976881›Full record

ArticleStandards in genomic sciences2013

Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain TA1.

Wayne Reeve, Rui Tian, Sofie De Meyer, Vanessa Melino, Jason Terpolilli, Julie Ardley, Ravi Tiwari, John Howieson, Ronald Yates, Graham O'Hara and 20 more

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Standards in genomic sciences, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.4field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

  1. Transcriptomic Response ofInternational journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors at 4 institutions in 2 countries.

Wayne ReeveCentre for Rhizobium Studies, Murdoch University, Western Australia, Australia.
Rui TianCentre for Rhizobium Studies, Murdoch University, Western Australia, Australia.
Sofie De MeyerCentre for Rhizobium Studies, Murdoch University, Western Australia, Australia.
Vanessa MelinoCentre for Rhizobium Studies, Murdoch University, Western Australia, Australia.
Jason TerpolilliCentre for Rhizobium Studies, Murdoch University, Western Australia, Australia.
Julie ArdleyCentre for Rhizobium Studies, Murdoch University, Western Australia, Australia.
Ravi TiwariCentre for Rhizobium Studies, Murdoch University, Western Australia, Australia.
John HowiesonCentre for Rhizobium Studies, Murdoch University, Western Australia, Australia.
Ronald YatesCentre for Rhizobium Studies, Murdoch University, Western Australia, Australia ; Department of Agriculture and Food, Western Australia, Australia.
Graham O'HaraCentre for Rhizobium Studies, Murdoch University, Western Australia, Australia.
Mohamed NinawiCentre for Rhizobium Studies, Murdoch University, Western Australia, Australia.
Hazuki TeshimaDOE Joint Genome Institute, Walnut Creek, California, USA.
David BruceDOE Joint Genome Institute, Walnut Creek, California, USA.
Chris DetterDOE Joint Genome Institute, Walnut Creek, California, USA.
Roxanne TapiaDOE Joint Genome Institute, Walnut Creek, California, USA.
Cliff HanDOE Joint Genome Institute, Walnut Creek, California, USA.
Chia-Lin WeiDOE Joint Genome Institute, Walnut Creek, California, USA.
Marcel HuntemannDOE Joint Genome Institute, Walnut Creek, California, USA.
James HanDOE Joint Genome Institute, Walnut Creek, California, USA.
I-Min ChenBiological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Konstantinos MavromatisDOE Joint Genome Institute, Walnut Creek, California, USA.
Victor MarkowitzBiological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Natalia IvanovaDOE Joint Genome Institute, Walnut Creek, California, USA.
Galina OvchinnikovaDOE Joint Genome Institute, Walnut Creek, California, USA.
Ioanna PaganiDOE Joint Genome Institute, Walnut Creek, California, USA.
Amrita PatiDOE Joint Genome Institute, Walnut Creek, California, USA.
Lynne GoodwinLos Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
Sam PitluckDOE Joint Genome Institute, Walnut Creek, California, USA.
Tanja WoykeDOE Joint Genome Institute, Walnut Creek, California, USA.
Nikos KyrpidesDOE Joint Genome Institute, Walnut Creek, California, USA.
Joint Genome Institute · USMurdoch University · AULawrence Berkeley National Laboratory · USLos Alamos National Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rhizobium leguminosarum bv. trifolii strain TA1 is an aerobic, motile, Gram-negative, non-spore-forming rod that is an effective nitrogen fixing microsymbiont on the perennial clovers originating from Europe and the Mediterranean basin. TA1 however is ineffective with many annual and perennial clovers originating from Africa and America. Here we describe the features of R. leguminosarum bv. trifolii strain TA1, together with genome sequence information and annotation. The 8,618,824 bp high-quality-draft genome is arranged in a 6 scaffold of 32 contigs, contains 8,493 protein-coding genes and 83 RNA-only encoding genes, and is one of 20 rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Community Sequencing Program.

Indexed as

Alphaproteobacterianitrogen fixationrhizobiaroot-nodule bacteria

Identifiers

PMID24976881
PMCPMC4062637
OpenAlexW2413083137

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.