Evidence map›Paper›PMID 24976879›Full record

ArticleStandards in genomic sciences2013

Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI565.

Wayne Reeve, Elizabeth Drew, Ross Ballard, Vanessa Melino, Rui Tian, Sofie De Meyer, Lambert Brau, Mohamed Ninawi, Hazuki Teshima, Lynne Goodwin and 8 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Standards in genomic sciences, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Wayne ReeveCentre for Rhizobium Studies, Murdoch University, Western Australia, Australia.
Elizabeth DrewSouth Australian Research and Development Institute, Urrbrae, South Australia, Australia.
Ross BallardSouth Australian Research and Development Institute, Urrbrae, South Australia, Australia.
Vanessa MelinoCentre for Rhizobium Studies, Murdoch University, Western Australia, Australia.
Rui TianCentre for Rhizobium Studies, Murdoch University, Western Australia, Australia.
Sofie De MeyerCentre for Rhizobium Studies, Murdoch University, Western Australia, Australia.
Lambert BrauSchool of Life and Environmental Sciences, Faculty of Science & Technology, Deakin University, Melbourne, Victoria, Australia.
Mohamed NinawiCentre for Rhizobium Studies, Murdoch University, Western Australia, Australia.
Hazuki TeshimaLos Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
Lynne GoodwinLos Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
Patrick ChainLos Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
Konstantinos LioliosDOE Joint Genome Institute, Walnut Creek, California, USA.
Amrita PatiDOE Joint Genome Institute, Walnut Creek, California, USA.
Konstantinos MavromatisDOE Joint Genome Institute, Walnut Creek, California, USA.
Natalia IvanovaDOE Joint Genome Institute, Walnut Creek, California, USA.
Victor MarkowitzBiological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Tanja WoykeDOE Joint Genome Institute, Walnut Creek, California, USA.
Nikos KyrpidesDOE Joint Genome Institute, Walnut Creek, California, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rhizobium leguminosarum bv. trifolii SRDI565 (syn. N8-J) is an aerobic, motile, Gram-negative, non-spore-forming rod. SRDI565 was isolated from a nodule recovered from the roots of the annual clover Trifolium subterraneum subsp. subterraneum grown in the greenhouse and inoculated with soil collected from New South Wales, Australia. SRDI565 has a broad host range for nodulation within the clover genus, however N2-fixation is sub-optimal with some Trifolium species and ineffective with others. Here we describe the features of R. leguminosarum bv. trifolii strain SRDI565, together with genome sequence information and annotation. The 6,905,599 bp high-quality-draft genome is arranged into 7 scaffolds of 7 contigs, contains 6,750 protein-coding genes and 86 RNA-only encoding genes, and is one of 100 rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project.

Indexed as

Alphaproteobacterianitrogen fixationrhizobiaroot-nodule bacteria

Identifiers

PMID24976879
PMCPMC4062631

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.