Evidence map›Paper›PMID 24974375›Full record

ArticleMolecular biology and evolution2014

Positive and purifying selection on the Drosophila Y chromosome.

Nadia D Singh, Leonardo B Koerich, Antonio Bernardo Carvalho, Andrew G Clark

Open access · bronzeAbstract read
In one paragraph

Article in Molecular biology and evolution, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 38 citations in OpenAlex.

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  8. New Genes in theGenes · 2021
    Article
  9. Evolution of master sex determiners: TGF-β signalling pathways at regulatory crossroads.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
    Review
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  15. High rate of translocation-based gene birth on theProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  16. Article
  17. Birth of a new gene on the Y chromosome of Drosophila melanogaster.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Nadia D SinghDepartment of Biological Sciences, North Carolina State University ndsingh@nscu.edu.
Leonardo B KoerichDepartamento de Genética, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.
Antonio Bernardo CarvalhoDepartamento de Genética, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.
Andrew G ClarkDepartment of Molecular Biology and Genetics, Cornell University.
Universidade Federal do Rio de Janeiro · BRNorth Carolina State University · USPediatrics and Genetics · US

Funding

Molecular Evolution of Drosophila Y ChromosomeR01GM064590 · NIGMS · PENNSYLVANIA STATE UNIVERSITY-UNIV PARK · PI CARVALHO, ANTONIO BERNARDO, CLARK, ANDREW G · 2002 to 2012
$2.0M
NIGMS NIH HHS R01 GM064590NIGMS NIH HHS R01 GM64590
6 · The paper itself

Abstract

Y chromosomes, with their reduced effective population size, lack of recombination, and male-limited transmission, present a unique collection of constraints for the operation of natural selection. Male-limited transmission may greatly increase the efficacy of selection for male-beneficial mutations, but the reduced effective size also inflates the role of random genetic drift. Together, these defining features of the Y chromosome are expected to influence rates and patterns of molecular evolution on the Y as compared with X-linked or autosomal loci. Here, we use sequence data from 11 genes in 9 Drosophila species to gain insight into the efficacy of natural selection on the Drosophila Y relative to the rest of the genome. Drosophila is an ideal system for assessing the consequences of Y-linkage for molecular evolution in part because the gene content of Drosophila Y chromosomes is highly dynamic, with orthologous genes being Y-linked in some species whereas autosomal in others. Our results confirm the expectation that the efficacy of natural selection at weakly selected sites is reduced on the Y chromosome. In contrast, purifying selection on the Y chromosome for strongly deleterious mutations does not appear to be compromised. Finally, we find evidence of recurrent positive selection for 4 of the 11 genes studied here. Our results thus highlight the variable nature of the mode and impact of natural selection on the Drosophila Y chromosome.

Indexed as

Selection, GeneticAnimalsDrosophilaEvolution, MolecularFemaleMaleModels, GeneticMutation RatePhylogenySequence DeletionY ChromosomeDrosophilapositive selectionpurifying selectionY chromosome

Identifiers

PMID24974375
PMCPMC4166921
OpenAlexW2161293475

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.