Evidence map›Paper›PMID 24973211›Full record

ArticleThe Journal of biological chemistry2014

Anamorsin, a novel caspase-3 substrate in neurodegeneration.

Nuri Yun, Young Mook Lee, Chiho Kim, Hirohiko Shibayama, Akira Tanimura, Yuri Hamanaka, Yuzuru Kanakura, Il-Seon Park, Areum Jo, Joo-Ho Shin and 3 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 2 countries.

Nuri YunFrom the Department of Systems Biology, Yonsei University College of Life Science and Biotechnology, Seoul 120-749, Korea.
Young Mook LeeFrom the Department of Systems Biology, Yonsei University College of Life Science and Biotechnology, Seoul 120-749, Korea.
Chiho KimFrom the Department of Systems Biology, Yonsei University College of Life Science and Biotechnology, Seoul 120-749, Korea.
Hirohiko ShibayamaDepartment of Hematology and Oncology, Osaka University Graduate School of Medicine, Osaka 565-0871, Japan.
Akira TanimuraDepartment of Hematology and Oncology, Osaka University Graduate School of Medicine, Osaka 565-0871, Japan.
Yuri HamanakaDepartment of Hematology and Oncology, Osaka University Graduate School of Medicine, Osaka 565-0871, Japan.
Yuzuru KanakuraDepartment of Hematology and Oncology, Osaka University Graduate School of Medicine, Osaka 565-0871, Japan.
Il-Seon ParkDepartment of Cellular and Molecular Medicine, College of Medicine, Chosun University, Gwangju 501-759, Korea.
Areum JoDivision of Pharmacology, Department of Molecular Cell Biology, Samsung Biomedical Research Institute, Sungkyunkwan University School of Medicine, Suwon 440-746, Gyeonggi-do, Korea, and.
Joo-Ho ShinDivision of Pharmacology, Department of Molecular Cell Biology, Samsung Biomedical Research Institute, Sungkyunkwan University School of Medicine, Suwon 440-746, Gyeonggi-do, Korea, and.
Chung JuDepartment of Neuroscience, College of Medicine, Korea University, Seoul 136-705, Korea.
Won-Ki KimDepartment of Neuroscience, College of Medicine, Korea University, Seoul 136-705, Korea wonki@korea.ac.kr.
Young J OhFrom the Department of Systems Biology, Yonsei University College of Life Science and Biotechnology, Seoul 120-749, Korea, yjoh@yonsei.ac.kr.
Yonsei University · KROsaka University · JPKorea University · KRSamsung (South Korea) · KRChosun University · KROsaka City University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Activated caspases play a central role in the execution of apoptosis by cleaving endogenous substrates. Here, we developed a high throughput screening method to identify novel substrates for caspase-3 in a neuronal cell line. Critical steps in our strategy consist of two-dimensional electrophoresis-based protein separation and in vitro caspase-3 incubation of immobilized proteins to sort out direct substrates. Among 46 putative substrates identified in MN9D neuronal cells, we further evaluated whether caspase-3-mediated cleavage of anamorsin, a recently recognized cell death-defying factor in hematopoiesis, is a general feature of apoptosis. In vitro and cell-based cleavage assays indicated that anamorsin was specifically cleaved by caspase-3 but not by other caspases, generating 25- and 10-kDa fragments. Thus, in apoptosis of neuronal and non-neuronal cells induced by various stimuli including staurosporine, etoposide, or 6-hydroxydopamine, the cleavage of anamorsin was found to be blocked in the presence of caspase inhibitor. Among four tetrapeptide consensus DXXD motifs existing in anamorsin, we mapped a specific cleavage site for caspase-3 at DSVD(209)↓L. Intriguingly, the 25-kDa cleaved fragment of anamorsin was also detected in post-mortem brains of Alzheimer and Parkinson disease patients. Although the RNA interference-mediated knockdown of anamorsin rendered neuronal cells more vulnerable to staurosporine treatment, reintroduction of full-length anamorsin into an anamorsin knock-out stromal cell line made cells resistant to staurosporine-induced caspase activation, indicating the antiapoptotic function of anamorsin. Taken together, our approach seems to be effective to identify novel substrates for caspases and has the potential to provide meaningful insights into newly identified substrates involved in neurodegenerative processes.

Indexed as

AgedAged, 80 and overAlzheimer DiseaseAmino Acid MotifsAmino Acid SequenceAnimalsApoptosisBinding SitesCase-Control StudiesCaspase 3Cell LineCells, CulturedFemaleGene Knockdown TechniquesHigh-Throughput Screening AssaysHumansCasp3 protein, mouseCaspase 3CIAPIN1 protein, humanCiapin1 protein, mouseIntracellular Signaling Peptides and ProteinsPeptide FragmentsApoptosisCaspaseNeurodegenerationNeurotoxinProteomics

Identifiers

PMID24973211
PMCPMC4139231
OpenAlexW1993633932

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.