Evidence map›Paper›PMID 24973064›Full record

ArticleApplied and environmental microbiology2014

Indigenous bacteria and fungi drive traditional kimoto sake fermentations.

Nicholas A Bokulich, Moe Ohta, Morgan Lee, David A Mills

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Lot-to-lot variation in the microbiota during the brewing process ofBioscience of microbiota, food and health · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. A dark matter inFrontiers in microbiology · 2023
    Article
  15. Article
  16. Diversity ofMicroorganisms · 2021
    Article
  17. Review
  18. Article
  19. Article
  20. Genomic information ofAIMS microbiology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Nicholas A BokulichDepartment of Viticulture and Enology, University of California, Davis, California, USA Department of Food Science and Technology, University of California, Davis, California, USA Foods for Health Institute, University of California, Davis, California, USA.
Moe OhtaDepartment of Viticulture and Enology, University of California, Davis, California, USA.
Morgan LeeDepartment of Viticulture and Enology, University of California, Davis, California, USA.
David A MillsDepartment of Viticulture and Enology, University of California, Davis, California, USA Department of Food Science and Technology, University of California, Davis, California, USA Foods for Health Institute, University of California, Davis, California, USA damills@ucdavis.edu.

Funding

Training Program in Biomolecular TechnologyT32GM008799 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI LEACH, J. KENT · 2002 to 2016
$2.4M
NIGMS NIH HHS T32 GM008799NIGMS NIH HHS T32-GM008799
6 · The paper itself

Abstract

Sake (Japanese rice wine) production is a complex, multistage process in which fermentation is performed by a succession of mixed fungi and bacteria. This study employed high-throughput rRNA marker gene sequencing, quantitative PCR, and terminal restriction fragment length polymorphism to characterize the bacterial and fungal communities of spontaneous sake production from koji to product as well as brewery equipment surfaces. Results demonstrate a dynamic microbial succession, with koji and early moto fermentations dominated by Bacillus, Staphylococcus, and Aspergillus flavus var. oryzae, succeeded by Lactobacillus spp. and Saccharomyces cerevisiae later in the fermentations. The microbiota driving these fermentations were also prevalent in the production environment, illustrating the reservoirs and routes for microbial contact in this traditional food fermentation. Interrogating the microbial consortia of production environments in parallel with food products is a valuable approach for understanding the complete ecology of food production systems and can be applied to any food system, leading to enlightened perspectives for process control and food safety.

Indexed as

BiotaBacteriaDNA, RibosomalFermentationFungiPolymorphism, Restriction Fragment LengthReal-Time Polymerase Chain ReactionSequence Analysis, DNAWineDNA, Ribosomal

Identifiers

PMID24973064
PMCPMC4136118

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.