Evidence map›Paper›PMID 24972791›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

SERS and MD simulation studies of a kinase inhibitor demonstrate the emergence of a potential drug discovery tool.

Dhanasekaran Karthigeyan, Soumik Siddhanta, Annavarapu Hari Kishore, Sathya S R R Perumal, Hans Ågren, Surabhi Sudevan, Akshay V Bhat, Karanam Balasubramanyam, Rangappa Kanchugarakoppal Subbegowda, Tapas K Kundu and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 46 citations in OpenAlex.

  1. Review
  2. Review
  3. Surface-Enhanced Raman Spectroscopy at the Interface between Drug Discovery and Personalized Medicine.The journal of physical chemistry. C, Nanomaterials and interfaces · 2024
    Review
  4. Article
  5. Article
  6. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Dhanasekaran KarthigeyanTranscription and Disease Laboratory, Molecular Biology and Genetics Unit.
Soumik SiddhantaLight Scattering Laboratory, Chemistry and Physics of Materials Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Jakkur, Bangalore 560064, India;
Annavarapu Hari KishoreDepartment of Studies in Chemistry, University of Mysore, Manasagangotri, Mysore 570006, India; and.
Sathya S R R PerumalDepartment of Theoretical Chemistry and Biology, School of Biotechnology, KTH Royal Institute of Technology, Roslagstullsbacken 15, SE-114 21 Stockholm, Sweden.
Hans ÅgrenDepartment of Theoretical Chemistry and Biology, School of Biotechnology, KTH Royal Institute of Technology, Roslagstullsbacken 15, SE-114 21 Stockholm, Sweden.
Surabhi SudevanTranscription and Disease Laboratory, Molecular Biology and Genetics Unit.
Akshay V BhatTranscription and Disease Laboratory, Molecular Biology and Genetics Unit.
Karanam BalasubramanyamTranscription and Disease Laboratory, Molecular Biology and Genetics Unit.
Rangappa Kanchugarakoppal SubbegowdaDepartment of Studies in Chemistry, University of Mysore, Manasagangotri, Mysore 570006, India; and cbhas@jncasr.ac.in rangappaks@chemistry.uni-mysore.ac.in tapas@jncasr.ac.in.
Tapas K KunduTranscription and Disease Laboratory, Molecular Biology and Genetics Unit, cbhas@jncasr.ac.in rangappaks@chemistry.uni-mysore.ac.in tapas@jncasr.ac.in.
Chandrabhas NarayanaLight Scattering Laboratory, Chemistry and Physics of Materials Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Jakkur, Bangalore 560064, India; cbhas@jncasr.ac.in rangappaks@chemistry.uni-mysore.ac.in tapas@jncasr.ac.in.ORCID http://orcid.org/0000-0001-6256-8994
Laboratory of Molecular Genetics · PLJawaharlal Nehru Centre for Advanced Scientific Research · INKTH Royal Institute of Technology · SEUniversity of Mysore · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We demonstrate the use of surface-enhanced Raman spectroscopy (SERS) as an excellent tool for identifying the binding site of small molecules on a therapeutically important protein. As an example, we show the specific binding of the common antihypertension drug felodipine to the oncogenic Aurora A kinase protein via hydrogen bonding interactions with Tyr-212 residue to specifically inhibit its activity. Based on SERS studies, molecular docking, molecular dynamics simulation, biochemical assays, and point mutation-based validation, we demonstrate the surface-binding mode of this molecule in two similar hydrophobic pockets in the Aurora A kinase. These binding pockets comprise the same unique hydrophobic patches that may aid in distinguishing human Aurora A versus human Aurora B kinase in vivo. The application of SERS to identify the specific interactions between small molecules and therapeutically important proteins by differentiating competitive and noncompetitive inhibition demonstrates its ability as a complementary technique. We also present felodipine as a specific inhibitor for oncogenic Aurora A kinase. Felodipine retards the rate of tumor progression in a xenografted nude mice model. This study reveals a potential surface pocket that may be useful for developing small molecules by selectively targeting the Aurora family kinases.

Indexed as

Molecular Dynamics SimulationSpectrum Analysis, RamanAnimalsAurora Kinase AAurora Kinase BBinding, CompetitiveCell CycleCell DeathDisease ProgressionDose-Response Relationship, DrugDrug DiscoveryFelodipineHeLa CellsHumansKineticsMiceAurora Kinase AAurora Kinase BFelodipineProtein Kinase Inhibitorsligand bindingstructure–activity relationshipvibrational spectroscopy

Identifiers

PMID24972791
PMCPMC4115535
OpenAlexW2011806950

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.