ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2014
A high-density genetic map with array-based markers facilitates structural and quantitative trait locus analyses of the common wheat genome.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
19 citing papers in PubMed, 1 synthesis or guideline pooled it, 29 citations in OpenAlex.
- Meta-QTLs and candidate genes for stripe rust resistance in wheat.Scientific reports · 2021Pooled it
- Allelic variations ofBreeding science · 2022Article
- Targeting thePlants (Basel, Switzerland) · 2021Article
- Biotechnological Methods for Buckwheat Breeding.Plants (Basel, Switzerland) · 2021Review
- Appraisal of wheat genomics for gene discovery and breeding applications: a special emphasis on advances in Asia.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Review
- Genome-Wide Variant Identification and High-Density Genetic Map Construction Using RADseq forG3 (Bethesda, Md.) · 2019Article
- Unraveling the genetic architecture of grain size in einkorn wheat through linkage and homology mapping and transcriptomic profiling.Journal of experimental botany · 2019Article
- Dense genotyping-by-sequencing linkage maps of two Synthetic W7984×Opata reference populations provide insights into wheat structural diversity.Scientific reports · 2019Article
- An efficient approach for the development of genome-specific markers in allohexaploid wheat (Triticum aestivum L.) and its application in the construction of high-density linkage maps of the D genome.DNA research : an international journal for rapid publication of reports on genes and genomes · 2018Article
- High-density genetic mapping of a major QTL for resistance to multiple races of loose smut in a tetraploid wheat cross.PloS one · 2018Article
- Genotyping-by-Sequencing Derived High-Density Linkage Map and its Application to QTL Mapping of Flag Leaf Traits in Bread Wheat.Scientific reports · 2017Article
- Development of the first consensus genetic map of intermediate wheatgrass (Thinopyrum intermedium) using genotyping-by-sequencing.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- Effect of Co-segregating Markers on High-Density Genetic Maps and Prediction of Map Expansion Using Machine Learning Algorithms.Frontiers in plant science · 2017Article
- Three dominant awnless genes in common wheat: Fine mapping, interaction and contribution to diversity in awn shape and length.PloS one · 2017Article
- Genome wide identification of C1-2i zinc finger proteins and their response to abiotic stress in hexaploid wheat.Molecular genetics and genomics : MGG · 2016Article
- Characterization of a mini core collection of Japanese wheat varieties using single-nucleotide polymorphisms generated by genotyping-by-sequencing.Breeding science · 2016Article
- Article
- NextGen sequencing reveals short double crossovers contribute disproportionately to genetic diversity in Toxoplasma gondii.BMC genomics · 2014Article
- Rapid genotyping with DNA micro-arrays for high-density linkage mapping and QTL mapping in common buckwheat (Fagopyrum esculentum Moench).Breeding science · 2014Article
Corrections and comments
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Authors and funding
8 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The large genome and allohexaploidy of common wheat have complicated construction of a high-density genetic map. Although improvements in the throughput of next-generation sequencing (NGS) technologies have made it possible to obtain a large amount of genotyping data for an entire mapping population by direct sequencing, including hexaploid wheat, a significant number of missing data points are often apparent due to the low coverage of sequencing. In the present study, a microarray-based polymorphism detection system was developed using NGS data obtained from complexity-reduced genomic DNA of two common wheat cultivars, Chinese Spring (CS) and Mironovskaya 808. After design and selection of polymorphic probes, 13,056 new markers were added to the linkage map of a recombinant inbred mapping population between CS and Mironovskaya 808. On average, 2.49 missing data points per marker were observed in the 201 recombinant inbred lines, with a maximum of 42. Around 40% of the new markers were derived from genic regions and 11% from repetitive regions. The low number of retroelements indicated that the new polymorphic markers were mainly derived from the less repetitive region of the wheat genome. Around 25% of the mapped sequences were useful for alignment with the physical map of barley. Quantitative trait locus (QTL) analyses of 14 agronomically important traits related to flowering, spikes, and seeds demonstrated that the new high-density map showed improved QTL detection, resolution, and accuracy over the original simple sequence repeat map.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.