Evidence map›Paper›PMID 24971742›Full record

ArticleJournal of medicinal chemistry2014

KDM4B as a target for prostate cancer: structural analysis and selective inhibition by a novel inhibitor.

Chia-Han Chu, Ling-Yu Wang, Kai-Cheng Hsu, Chung-Chin Chen, Hsing-Hung Cheng, Szu-Min Wang, Chien-Ming Wu, Tsan-Jan Chen, Ling-Ting Li, Ruiwu Liu and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of medicinal chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
7.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 104 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Review
  10. Lysine and arginine methylation of transcription factors.Cellular and molecular life sciences : CMLS · 2024
    Review
  11. Article
  12. Review
  13. Vitamin BNature metabolism · 2023
    Article
  14. Article
  15. Epigenetic (De)regulation in Prostate Cancer.Cancer treatment and research · 2023
    Article
  16. Article
  17. KDM4 Demethylases: Structure, Function, and Inhibitors.Advances in experimental medicine and biology · 2023
    Article
  18. JMJD8 Functions as a Novel AKT1 Lysine Demethylase.International journal of molecular sciences · 2022
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Chia-Han ChuInstitute of Molecular and Cellular Biology and Department of Life Sciences and ‡Biomedical Science and Engineering Center, National Tsing-Hua University , Hsinchu, 30013, Taiwan.
Ling-Yu Wang
Kai-Cheng Hsu
Chung-Chin Chen
Hsing-Hung Cheng
Szu-Min Wang
Chien-Ming Wu
Tsan-Jan Chen
Ling-Ting Li
Ruiwu Liu
Chiu-Lien Hung
Jing-Moon Yang
Hsing-Jien Kung
Wen-Ching Wang
University of California, Davis · USNational Yang Ming Chiao Tung University · TWNational Tsing Hua University · TW

Funding

Staff InvestigatorsP30CA093373 · NCI · UNIVERSITY OF CALIFORNIA DAVIS · PI Laura Marcu · 2002 to 2026
$84.9M
NCI NIH HHS P30 CA093373
6 · The paper itself

Abstract

The KDM4/JMJD2 Jumonji C-containing histone lysine demethylases (KDM4A-KDM4D), which selectively remove the methyl group(s) from tri/dimethylated lysine 9/36 of H3, modulate transcriptional activation and genome stability. The overexpression of KDM4A/KDM4B in prostate cancer and their association with androgen receptor suggest that KDM4A/KDM4B are potential progression factors for prostate cancer. Here, we report the crystal structure of the KDM4B·pyridine 2,4-dicarboxylic acid·H3K9me3 ternary complex, revealing the core active-site region and a selective K9/K36 site. A selective KDM4A/KDM4B inhibitor, 4, that occupies three subsites in the binding pocket is identified by virtual screening. Pharmacological and genetic inhibition of KDM4A/KDM4B significantly blocks the viability of cultured prostate cancer cells, which is accompanied by increased H3K9me3 staining and transcriptional silencing of growth-related genes. Significantly, a substantial portion of differentially expressed genes are AR-responsive, consistent with the roles of KDM4s as critical AR activators. Our results point to KDM4 as a useful therapeutic target and identify a new inhibitor scaffold.

Indexed as

Molecular Targeted TherapyApoptosisCell ProliferationCrystallography, X-RayDose-Response Relationship, DrugEnzyme InhibitorsHumansJumonji Domain-Containing Histone DemethylasesKineticsMaleModels, MolecularProstatic NeoplasmsStilbenesStructure-Activity RelationshipTumor Cells, Cultured1,5-bis(2-(3,4-dichlorophenyl)ethenyl)-2,4-dinitrobenzeneEnzyme InhibitorsJumonji Domain-Containing Histone DemethylasesKDM4B protein, humanStilbenes

Identifiers

PMID24971742
PMCPMC4216216
OpenAlexW2002012961

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.