Evidence map›Paper›PMID 24970615›Full record

ArticleAnalytical chemistry2014

General approach for characterizing in vitro selected peptides with protein binding affinity.

Andrew C Larsen, Annabelle Gillig, Pankti Shah, Sujay P Sau, Kathryn E Fenton, John C Chaput

Abstract read
In one paragraph

Article in Analytical chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Nanomaterial and interface advances in immunoassay biosensors.The journal of physical chemistry. C, Nanomaterials and interfaces · 2022
    Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Andrew C LarsenDepartment of Chemistry and Biochemistry and ‡The Biodesign Institute, Arizona State University , Tempe, Arizona 85287, United States.
Annabelle Gillig
Pankti Shah
Sujay P Sau
Kathryn E Fenton
John C Chaput

Funding

A Pipeline for Production of Bivalent Synthetic Antibodies to the Human ProteomeU54DK093449 · NIDDK · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI CHAPUT, JOHN CHARLES, LABAER, JOSHUA · 2011 to 2013
$4.1M
NIDDK NIH HHS 5U54DK093449NIDDK NIH HHS U54 DK093449
6 · The paper itself

Abstract

In vitro selection technologies are important tools for identifying high affinity peptides to proteins of broad medical and biological interest. However, the technological advances that have made it possible to generate long lists of candidate peptides have far outpaced our ability to characterize the binding properties of individual peptides. Here, we describe a low cost strategy to rapidly synthesize, purify, screen, and characterize peptides for high binding affinity. Peptides are assayed in a 96-well dot blot apparatus using membranes that enable partitioning of bound and unbound peptide-protein complexes. We have validated the binding affinity constants produced by this method using known peptide ligands and applied this process to discover five new peptides with nanomolar affinity to human α-thrombin. Given the need for new analytical tools that can accelerate peptide discovery and characterization, we feel that this approach would be useful to a wide range of technologies that utilize high affinity peptides.

Indexed as

Amino Acid SequenceIn Vitro TechniquesMolecular Sequence DataPeptidesProtein BindingProteinsSequence Homology, Amino AcidPeptidesProteins

Identifiers

PMID24970615
PMCPMC4215864

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.