Evidence map›Paper›PMID 24969482›Full record

ArticleMolecular biology reports2014

Isolation and characterization of the Agvip1 gene and response to abiotic and metal ions stresses in three celery cultivars.

Yan Li, Yi-Yun Chen, Feng Wang, Zhi-Sheng Xu, Qian Jiang, Ai-Sheng Xiong

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In one paragraph

Article in Molecular biology reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 5 citations in OpenAlex.

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4 · The record

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5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Yan LiState Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Biology and Germplasm Enhancement of Horticultural Crops in East China of Ministry of Agriculture, College of Horticulture, Nanjing Agricultural University, 1 Weigang, Nanjing, 210095, China.
Yi-Yun Chen
Feng Wang
Zhi-Sheng Xu
Qian Jiang
Ai-Sheng Xiong
Nanjing Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

VIP1, a VirE2-interacting protein 1, specifically interacts with VirE2 and acts as a molecular adaptor in Agrobacterium-mediated genetic transformation. This protein is widely used in plant genetic engineering. In this study, we cloned the Agvip1 gene that encodes the AgVIP1 protein from three celery (Apium graveolens) cultivars, namely, "Liuhe Huangxinqin", "Jinnan Shiqin", and "Ventura". The sequence analysis indicated that the Agvip1 gene from the three celery cultivars contained 768 bp Open Reading Frame and encoded with 255 amino acid residues. The N-terminal of AgVIP1 contained RNA recognition motif superfamily, a conserved domain. The Agvip1 gene in three cultivars had very high homology. The phylogenetic tree of VIP1-like proteins was constructed among celery and other plant species, showing that VIP1-like proteins from Solanum lycopersicum and Solanum tuberosum in Solanaceae had the shortest evolutionary relationship with AgVIP1 from A. graveolens in Apiaceae. Quantitative real-time PCR demonstrated that the Agvip1 gene had tissue-specific expression, mainly in the celery root. The expression analysis showed that the Agvip1 gene was induced by abiotic stresses differently in three celery cultivars. In "Liuhe Huangxinqin", the Agvip1 gene was up-regulated under hot, cold stresses. In "Jinnan Shiqin", the Agvip1 gene was up-regulated obviously under cold, drought treatments. However, in "Ventura", the Agvip1 gene was up-regulated under salt stress. The Agvip1 was also induced after metal ions treatments in three celery cultivars. These findings will provide more information on the Agvip1 gene and AgVIP1 protein, and enhance the understanding of the Agvip1 gene regulatory mechanisms under abiotic and metal ions stresses in celery.

Indexed as

Gene Expression Regulation, PlantAmino Acid SequenceApiumCloning, MolecularEvolution, MolecularGenes, PlantIonsMetalsMolecular Sequence DataOrgan SpecificityPhylogenyPlant ProteinsProtein Structure, TertiarySequence Analysis, DNAStress, PhysiologicalIonsMetalsPlant Proteins

Identifiers

PMID24969482
OpenAlexW2070508585

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.