Evidence map›Paper›PMID 24965736›Full record

ArticleFEMS microbiology letters2014

Integration host factor is required for replication of pYGK-derived plasmids in Aggregatibacter actinomycetemcomitans.

Ascención Torres-Escobar, María D Juárez-Rodríguez, Donald R Demuth

Open access · bronzeAbstract readLetter
In one paragraph

Article in FEMS microbiology letters, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 91% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Ascención Torres-EscobarResearch Group in Oral Health and Systemic Disease, University of Louisville School of Dentistry, Louisville, KY, USA.
María D Juárez-Rodríguez
Donald R Demuth
University of Louisville · US

Funding

Intra-and interspecies communication in oral bacteriaR01DE014605 · NIDCR · UNIVERSITY OF LOUISVILLE · PI URIARTE, SILVIA M · 2003 to 2018
$5.3M
NIDCR NIH HHS R01 DE014605NIDCR NIH HHS R01DE14605
6 · The paper itself

Abstract

In this study, we show that integration host factor protein (IHF) is required for replication of pYGK plasmids in Aggregatibacter actinomycetemcomitans. YGK plasmids were not replicated in A. actinomycetemcomitans strains lacking either the α- or β- subunit of IHF. However, the deletion mutants were complemented, and plasmid replication was restored when the promoter region and gene for either ihfA or ihfB was cloned into pYGK. We also identified two motifs that resemble the consensus IHF-binding site in a 813-bp fragment containing the pYGK origin of replication. Using electrophoretic mobility shift assays, purified IHFα-IHFβ protein complex was shown to bind to probes containing either of these motifs. To our knowledge, this is the first report showing that plasmid replication is IHF-dependent in the family Pasteurellaceae. In addition, using site-direct mutagenesis, the XbaI and KpnI restriction sites in the suicide vector pJT1 were modified to generate plasmid pJT10. The introduction of these new unique sites in pJT10 facilitates the transfer of transcriptional or translational lacZ fusion constructs for the generation of single-copy chromosomal insertion of the reporter construct. Plasmid pJT10 and its derivatives will be useful for genetic studies in Aggregatibacter (Actinobacillus) and probably other genera of Pasteurellaceae, including Haemophilus, Pasteurella, and Mannheimia.

Indexed as

DNA ReplicationPlasmidsAggregatibacter actinomycetemcomitansBinding SitesElectrophoretic Mobility Shift AssayGene DeletionGenetic Complementation TestGenetic VectorsIntegration Host FactorsProtein BindingReplication OriginIntegration Host Factorsintegration host factorPasteurellaceaeplasmid replication

Identifiers

PMID24965736
PMCPMC4405034
OpenAlexW2021654778

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.