Evidence map›Paper›PMID 24965656›Full record

ArticleNature2014

Structural rearrangements of a polyketide synthase module during its catalytic cycle.

Jonathan R Whicher, Somnath Dutta, Douglas A Hansen, Wendi A Hale, Joseph A Chemler, Annie M Dosey, Alison R H Narayan, Kristina Håkansson, David H Sherman, Janet L Smith and 1 more

Abstract read
In one paragraph

Article in Nature, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 97 papers.

0numbers the graph read from it
0cells of the map it votes in
97citing papers in PubMed
23.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

97 citing papers in PubMed, 196 citations in OpenAlex.

  1. Article
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  7. Review
  8. Article
  9. Review
  10. Review
  11. Review
  12. Current State-of-the-Art Toward Chemoenzymatic Synthesis of Polyketide Natural Products.Chembiochem : a European journal of chemical biology · 2023
    Review
  13. Structure of a modular polyketide synthase reducing region.Structure (London, England : 1993) · 2023
    Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article

37 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Jonathan R Whicher1] Life Sciences Institute, University of Michigan, Ann Arbor, Michigan 48109, USA [2] Chemical Biology Graduate Program, University of Michigan, Ann Arbor, Michigan 48109, USA [3].
Somnath Dutta1] Life Sciences Institute, University of Michigan, Ann Arbor, Michigan 48109, USA [2].
Douglas A Hansen1] Life Sciences Institute, University of Michigan, Ann Arbor, Michigan 48109, USA [2] Department of Medicinal Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA.
Wendi A HaleDepartment of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA.
Joseph A ChemlerLife Sciences Institute, University of Michigan, Ann Arbor, Michigan 48109, USA.
Annie M DoseyLife Sciences Institute, University of Michigan, Ann Arbor, Michigan 48109, USA.
Alison R H NarayanLife Sciences Institute, University of Michigan, Ann Arbor, Michigan 48109, USA.
Kristina HåkanssonDepartment of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA.
David H Sherman1] Life Sciences Institute, University of Michigan, Ann Arbor, Michigan 48109, USA [2] Department of Medicinal Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA [3] Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA [4] Department of Microbiology & Immunology, University of Michigan, Ann Arbor, Michigan 48109, USA.
Janet L Smith1] Life Sciences Institute, University of Michigan, Ann Arbor, Michigan 48109, USA [2] Department of Biological Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA.
Georgios Skiniotis1] Life Sciences Institute, University of Michigan, Ann Arbor, Michigan 48109, USA [2] Department of Biological Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA.
University of Michigan–Ann Arbor · US

Funding

STRUCTURE AND FUNCTION OF A PURINE BIOSYNTHETIC ENZYMER01DK042303 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SMITH, JANET L. · 1990 to 2024
$6.6M
Molecular Analysis of Modular Polyketide SynthasesR01GM076477 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SHERMAN, DAVID H, SMITH, JANET L. · 2006 to 2018
$5.2M
MICHIGAN CHEMISTRY-BIOLOGY INTERFACE TRAINING PROGRAMT32GM008597 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MONTGOMERY, JOHN · 1996 to 2018
$5.0M
GLUTAMINE AMIDOTRANSFERASES AND PARTNER ENZYMESR37DK042303 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SMITH, JANET L. · 1998 to 2007
$2.4M
Architectural Basis of Leptin Transmembrane SignalingR01DK090165 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SKINIOTIS, GEORGIOS · 2011 to 2017
$2.3M
Novel Approaches for Structural Determination of Cancer Stem Cell GlycansR21CA138331 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HAKANSSON, KRISTINA · 2010 to 2012
$603k
NCI NIH HHS 1R21CA138331-01A1NCI NIH HHS R21 CA138331NIDDK NIH HHS DK042303NIDDK NIH HHS DK090165NIDDK NIH HHS R01 DK042303NIDDK NIH HHS R01 DK090165NIDDK NIH HHS R37 DK042303NIGMS NIH HHS GM076477NIGMS NIH HHS R01 GM076477NIGMS NIH HHS T32 GM008597
6 · The paper itself

Abstract

The polyketide synthase (PKS) mega-enzyme assembly line uses a modular architecture to synthesize diverse and bioactive natural products that often constitute the core structures or complete chemical entities for many clinically approved therapeutic agents. The architecture of a full-length PKS module from the pikromycin pathway of Streptomyces venezuelae creates a reaction chamber for the intramodule acyl carrier protein (ACP) domain that carries building blocks and intermediates between acyltransferase, ketosynthase and ketoreductase active sites (see accompanying paper). Here we determine electron cryo-microscopy structures of a full-length pikromycin PKS module in three key biochemical states of its catalytic cycle. Each biochemical state was confirmed by bottom-up liquid chromatography/Fourier transform ion cyclotron resonance mass spectrometry. The ACP domain is differentially and precisely positioned after polyketide chain substrate loading on the active site of the ketosynthase, after extension to the β-keto intermediate, and after β-hydroxy product generation. The structures reveal the ACP dynamics for sequential interactions with catalytic domains within the reaction chamber, and for transferring the elongated and processed polyketide substrate to the next module in the PKS pathway. During the enzymatic cycle the ketoreductase domain undergoes dramatic conformational rearrangements that enable optimal positioning for reductive processing of the ACP-bound polyketide chain elongation intermediate. These findings have crucial implications for the design of functional PKS modules, and for the engineering of pathways to generate pharmacologically relevant molecules.

Indexed as

BiocatalysisAcyl Carrier ProteinAcyltransferasesAlcohol OxidoreductasesBacterial ProteinsCatalytic DomainCryoelectron MicroscopyMacrolidesModels, MolecularPolyketide SynthasesProtein Structure, TertiaryStreptomycesAcyl Carrier ProteinAcyltransferasesAlcohol OxidoreductasesBacterial ProteinsMacrolidespicromycinpolyketide synthase ketoreductasePolyketide Synthases

Identifiers

PMID24965656
PMCPMC4074775
OpenAlexW1993107257

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.