Evidence map›Paper›PMID 24965474›Full record

ArticleJournal of virology2014

Development of giant bacteriophage ϕKZ is independent of the host transcription apparatus.

Pieter-Jan Ceyssens, Leonid Minakhin, An Van den Bossche, Maria Yakunina, Evgeny Klimuk, Bob Blasdel, Jeroen De Smet, Jean-Paul Noben, Udo Bläsi, Konstantin Severinov and 1 more

Abstract read
In one paragraph

Article in Journal of virology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 125 papers.

0numbers the graph read from it
0cells of the map it votes in
125citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

125 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. The biology of jumbo phages.Nature communications · 2026
    Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Bacteriophage genome-wide transposon mutagenesis.bioRxiv : the preprint server for biology · 2025
    Article
  12. Review
  13. Article
  14. The Biology of Nucleus-Forming Jumbo Phages.Annual review of genetics · 2025
    Review
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article

65 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Pieter-Jan CeyssensDivision of Gene Technology, KU Leuven, Heverlee, Belgium.
Leonid MinakhinWaksman Institute of Microbiology, Rutgers University, New Jersey, USA.
An Van den BosscheDivision of Gene Technology, KU Leuven, Heverlee, Belgium.
Maria YakuninaSt. Petersburg State Polytechnical University, St. Petersburg, Russia.
Evgeny KlimukSt. Petersburg State Polytechnical University, St. Petersburg, Russia Institutes of Molecular Genetics and Gene Biology, Russian Academy of Sciences, Moscow, Russia Skolkovo Institute of Science and Technology, Skolkovo, Russia.
Bob BlasdelDivision of Gene Technology, KU Leuven, Heverlee, Belgium.
Jeroen De SmetDivision of Gene Technology, KU Leuven, Heverlee, Belgium.
Jean-Paul NobenBiomedical Research Institute, Hasselt University, Diepenbeek, Belgium.
Udo BläsiMax F. Perutz Laboratories, University of Vienna, Vienna, Austria.
Konstantin SeverinovWaksman Institute of Microbiology, Rutgers University, New Jersey, USA St. Petersburg State Polytechnical University, St. Petersburg, Russia Institutes of Molecular Genetics and Gene Biology, Russian Academy of Sciences, Moscow, Russia Skolkovo Institute of Science and Technology, Skolkovo, Russia severik@waksman.rutgers.edu rob.lavigne@biw.kuleuven.be.
Rob LavigneDivision of Gene Technology, KU Leuven, Heverlee, Belgium severik@waksman.rutgers.edu rob.lavigne@biw.kuleuven.be.

Funding

NIGMS NIH HHS GM59259
6 · The paper itself

Abstract

unlabelledPseudomonas aeruginosa bacteriophage ϕKZ is the type representative of the giant phage genus, which is characterized by unusually large virions and genomes. By unraveling the transcriptional map of the ∼ 280-kb ϕKZ genome to single-nucleotide resolution, we combine 369 ϕKZ genes into 134 operons. Early transcription is initiated from highly conserved AT-rich promoters distributed across the ϕKZ genome and located on the same strand of the genome. Early transcription does not require phage or host protein synthesis. Transcription of middle and late genes is dependent on protein synthesis and mediated by poorly conserved middle and late promoters. Unique to ϕKZ is its ability to complete its infection in the absence of bacterial RNA polymerase (RNAP) enzyme activity. We propose that transcription of the ϕKZ genome is performed by the consecutive action of two ϕKZ-encoded, noncanonical multisubunit RNAPs, one of which is packed within the virion, another being the product of early genes. This unique, rifampin-resistant transcriptional machinery is conserved within the diverse giant phage genus. IMPORTANCE: The data presented in this paper offer, for the first time, insight into the complex transcriptional scheme of giant bacteriophages. We show that Pseudomonas aeruginosa giant phage ϕKZ is able to infect and lyse its host cell and produce phage progeny in the absence of functional bacterial transcriptional machinery. This unique property can be attributed to two phage-encoded putative RNAP enzymes, which contain very distant homologues of bacterial β and β'-like RNAP subunits.

Indexed as

Gene Expression Regulation, ViralBacterial ProteinsBacteriophagesDNA-Directed RNA PolymerasesGenome, ViralHost-Pathogen InteractionsPseudomonas aeruginosaPseudomonas PhagesTranscription, GeneticViral ProteinsVirus ReplicationBacterial ProteinsDNA-Directed RNA PolymerasesViral Proteins

Identifiers

PMID24965474
PMCPMC4178840

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.