Evidence map›Paper›PMID 24965177›Full record

ArticlePlant physiology2014

Genetic Evidence That Chain Length and Branch Point Distributions Are Linked Determinants of Starch Granule Formation in Arabidopsis.

Barbara Pfister, Kuan-Jen Lu, Simona Eicke, Regina Feil, John E Lunn, Sebastian Streb, Samuel C Zeeman

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
6.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 57 citations in OpenAlex.

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  18. Bioinformatic andFrontiers in plant science · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Barbara PfisterDepartment of Biology, ETH Zurich, 8092 Zurich, Switzerland (B.P., K.-J.L., S.E., S.S., S.C.Z.); andMax Planck Institute for Molecular Plant Physiology, 14476 Potsdam, Germany (R.F., J.E.L.).
Kuan-Jen LuDepartment of Biology, ETH Zurich, 8092 Zurich, Switzerland (B.P., K.-J.L., S.E., S.S., S.C.Z.); andMax Planck Institute for Molecular Plant Physiology, 14476 Potsdam, Germany (R.F., J.E.L.).
Simona EickeDepartment of Biology, ETH Zurich, 8092 Zurich, Switzerland (B.P., K.-J.L., S.E., S.S., S.C.Z.); andMax Planck Institute for Molecular Plant Physiology, 14476 Potsdam, Germany (R.F., J.E.L.).
Regina FeilDepartment of Biology, ETH Zurich, 8092 Zurich, Switzerland (B.P., K.-J.L., S.E., S.S., S.C.Z.); andMax Planck Institute for Molecular Plant Physiology, 14476 Potsdam, Germany (R.F., J.E.L.).
John E LunnDepartment of Biology, ETH Zurich, 8092 Zurich, Switzerland (B.P., K.-J.L., S.E., S.S., S.C.Z.); andMax Planck Institute for Molecular Plant Physiology, 14476 Potsdam, Germany (R.F., J.E.L.).
Sebastian StrebDepartment of Biology, ETH Zurich, 8092 Zurich, Switzerland (B.P., K.-J.L., S.E., S.S., S.C.Z.); andMax Planck Institute for Molecular Plant Physiology, 14476 Potsdam, Germany (R.F., J.E.L.).
Samuel C ZeemanDepartment of Biology, ETH Zurich, 8092 Zurich, Switzerland (B.P., K.-J.L., S.E., S.S., S.C.Z.); andMax Planck Institute for Molecular Plant Physiology, 14476 Potsdam, Germany (R.F., J.E.L.) szeeman@ethz.ch.
ETH Zurich · CHMax Planck Institute of Molecular Plant Physiology · DEMax Planck Society · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The major component of starch is the branched glucan amylopectin. Structural features of amylopectin, such as the branching pattern and the chain length distribution, are thought to be key factors that enable it to form semicrystalline starch granules. We varied both structural parameters by creating Arabidopsis (Arabidopsis thaliana) mutants lacking combinations of starch synthases (SSs) SS1, SS2, and SS3 (to vary chain lengths) and the debranching enzyme ISOAMYLASE1-ISOAMYLASE2 (ISA; to alter branching pattern). The isa mutant accumulates primarily phytoglycogen in leaf mesophyll cells, with only small amounts of starch in other cell types (epidermis and bundle sheath cells). This balance can be significantly shifted by mutating different SSs. Mutation of SS1 promoted starch synthesis, restoring granules in mesophyll cell plastids. Mutation of SS2 decreased starch synthesis, abolishing granules in epidermal and bundle sheath cells. Thus, the types of SSs present affect the crystallinity and thus the solubility of the glucans made, compensating for or compounding the effects of an aberrant branching pattern. Interestingly, ss2 mutant plants contained small amounts of phytoglycogen in addition to aberrant starch. Likewise, ss2ss3 plants contained phytoglycogen, but were almost devoid of glucan despite retaining other SS isoforms. Surprisingly, glucan production was restored in the ss2ss3isa triple mutants, indicating that SS activity in ss2ss3 per se is not limiting but that the isoamylase suppresses glucan accumulation. We conclude that loss of only SSs can cause phytoglycogen production. This is readily degraded by isoamylase and other enzymes so it does not accumulate and was previously unnoticed.

Identifiers

PMID24965177
PMCPMC4119031
OpenAlexW2125780948

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.