Evidence map›Paper›PMID 24964778›Full record

ArticleVirus genes2014

The complete genome of a putative endornavirus identified in yerba mate (Ilex paraguariensis St. Hil.).

Humberto J Debat, Mauro Grabiele, Patricia M Aguilera, Rosana Bubillo, Pedro D Zapata, Dardo A Marti, Daniel A Ducasse

Abstract read
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In one paragraph

Article in Virus genes, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Humberto J DebatInstituto de Patología Vegetal, Centro de Investigaciones Agropecuarias, Instituto Nacional de Tecnología Agropecuaria (IPAVE-CIAP-INTA), X5020ICA, Córdoba, Argentina, hdebat@correo.inta.gov.ar.
Mauro Grabiele
Patricia M Aguilera
Rosana Bubillo
Pedro D Zapata
Dardo A Marti
Daniel A Ducasse

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We present the first report of a virus infecting the subtropical tree crop yerba mate (Ilex paraguariensis St. Hil.). Total RNA purification, followed by next-generation sequencing, transcripts assembly and annotation, resulted in the identification of a new endornavirus species infecting yerba mate. The complete sequence of the linear dsRNA viral genome is 13,954-nt long, contains a single 13,743 nt ORF, and presents a 149 nt 5'UTR and a 61 nt 3'UTR. The predicted ORF encodes a 4,581 aa polypeptide with a UDP-glucose glycosyl-transferase, a capsular polysaccharide synthesis protein, and a RNA-dependent RNA polymerase domain. The name yerba mate endornavirus is proposed for the identified virus. Due to the intriguing peculiarities of this virus family, and the complete lack of the yerba mate virus literature, we consider that the information reported here will be helpful in leading to a new and needed attention to this important topic and crop.

Indexed as

Genome, ViralSequence Analysis, DNA3' Untranslated Regions5' Untranslated RegionsCluster AnalysisIlex paraguariensisMolecular Sequence DataOpen Reading FramesPhylogenyPlant VirusesPolyproteinsRNA, Double-StrandedRNA, ViralRNA VirusesSequence Homology3' Untranslated Regions5' Untranslated RegionsPolyproteinsRNA, Double-StrandedRNA, Viral

Identifiers

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.