Evidence map›Paper›PMID 24962368›Full record

ArticleRNA (New York, N.Y.)2014

eIF4F-like complexes formed by cap-binding homolog TbEIF4E5 with TbEIF4G1 or TbEIF4G2 are implicated in post-transcriptional regulation in Trypanosoma brucei.

Eden R Freire, Ajay A Vashisht, Amaranta M Malvezzi, Joanna Zuberek, Gerasimos Langousis, Edwin A Saada, Janaína De F Nascimento, Janusz Stepinski, Edward Darzynkiewicz, Kent Hill and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Characterization of an Atypical eIF4E Ortholog inInternational journal of molecular sciences · 2021
    Article
  10. Article
  11. LeishIF4E-5 Is a Promastigote-Specific Cap-Binding Protein inInternational journal of molecular sciences · 2021
    Article
  12. Article
  13. Review
  14. Computational study on the allosteric mechanism ofComputational and structural biotechnology journal · 2021
    Article
  15. Article
  16. Article
  17. Regulation of Translation in the Protozoan ParasiteInternational journal of molecular sciences · 2020
    Review
  18. eIF4E and Interactors from Unicellular Eukaryotes.International journal of molecular sciences · 2020
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 3 countries.

Eden R FreireDepartment of Microbiology, Immunology and Molecular Genetics, David Geffen School of Medicine, University of California at Los Angeles, Los Angeles, California 90095, USA.
Ajay A VashishtDepartment of Biological Chemistry, David Geffen School of Medicine, University of California at Los Angeles, Los Angeles, California 90095, USA.
Amaranta M MalvezziDepartment of Microbiology, Immunology and Molecular Genetics, David Geffen School of Medicine, University of California at Los Angeles, Los Angeles, California 90095, USA Department of Microbiology, Centro de Pesquisas Aggeu Magalhães, Fundação Oswaldo Cruz, Recife, Pernambuco 50670-420, Brazil.
Joanna ZuberekDivision of Biophysics, Institute of Experimental Physics, Faculty of Physics, University of Warsaw, 02-089 Warsaw, Poland.
Gerasimos LangousisDepartment of Microbiology, Immunology and Molecular Genetics, David Geffen School of Medicine, University of California at Los Angeles, Los Angeles, California 90095, USA.
Edwin A SaadaDepartment of Microbiology, Immunology and Molecular Genetics, David Geffen School of Medicine, University of California at Los Angeles, Los Angeles, California 90095, USA.
Janaína De F NascimentoDepartment of Microbiology, Centro de Pesquisas Aggeu Magalhães, Fundação Oswaldo Cruz, Recife, Pernambuco 50670-420, Brazil.
Janusz StepinskiDivision of Biophysics, Institute of Experimental Physics, Faculty of Physics, University of Warsaw, 02-089 Warsaw, Poland.
Edward DarzynkiewiczDivision of Biophysics, Institute of Experimental Physics, Faculty of Physics, University of Warsaw, 02-089 Warsaw, Poland Centre of New Technologies, University of Warsaw, 02-089 Warsaw, Poland.
Kent HillDepartment of Microbiology, Immunology and Molecular Genetics, David Geffen School of Medicine, University of California at Los Angeles, Los Angeles, California 90095, USA.
Osvaldo P De Melo NetoDepartment of Microbiology, Centro de Pesquisas Aggeu Magalhães, Fundação Oswaldo Cruz, Recife, Pernambuco 50670-420, Brazil.
James A WohlschlegelDepartment of Biological Chemistry, David Geffen School of Medicine, University of California at Los Angeles, Los Angeles, California 90095, USA.
Nancy R SturmDepartment of Microbiology, Immunology and Molecular Genetics, David Geffen School of Medicine, University of California at Los Angeles, Los Angeles, California 90095, USA.
David A CampbellDepartment of Microbiology, Immunology and Molecular Genetics, David Geffen School of Medicine, University of California at Los Angeles, Los Angeles, California 90095, USA.
University of California, Los Angeles · USUniversity of Warsaw · PLFundação Oswaldo Cruz · BR

Funding

Biochemical and Functional Analysis of TrypaninR01AI052348 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HILL, KENT L · 2002 to 2023
$7.4M
Proteolytic Control of Iron Metabolism by the Ubiquitin Ligase FBXL5R01GM089778 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI WOHLSCHLEGEL, JAMES AKIRA · 2010 to 2023
$4.0M
Kinetoplastid SL RNA BiogenesisR01AI056034 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CAMPBELL, DAVID A · 2004 to 2013
$3.7M
Translational partitioning of the SL RNAR21AI073806 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CAMPBELL, DAVID A · 2009 to 2010
$424k
Biochemical and Functional Analysis of TrypaninR56AI052348 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HILL, KENT L · 2007 to 2007
$374k
Cap binding and gene expression in trypanosomesR03TW009035 · FIC · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CAMPBELL, DAVID A · 2012 to 2014
$175k
FIC NIH HHS R03 TW009035FIC NIH HHS TW009035NIAID NIH HHS AI052348NIAID NIH HHS AI056034NIAID NIH HHS AI073806NIAID NIH HHS R01 AI052348NIAID NIH HHS R01 AI056034NIAID NIH HHS R21 AI073806NIAID NIH HHS R56 AI052348NIGMS NIH HHS GM089778NIGMS NIH HHS R01 GM089778
6 · The paper itself

Abstract

Members of the eIF4E mRNA cap-binding family are involved in translation and the modulation of transcript availability in other systems as part of a three-component complex including eIF4G and eIF4A. The kinetoplastids possess four described eIF4E and five eIF4G homologs. We have identified two new eIF4E family proteins in Trypanosoma brucei, and define distinct complexes associated with the fifth member, TbEIF4E5. The cytosolic TbEIF4E5 protein binds cap 0 in vitro. TbEIF4E5 was found in association with two of the five TbEIF4Gs. TbIF4EG1 bound TbEIF4E5, a 47.5-kDa protein with two RNA-binding domains, and either the regulatory protein 14-3-3 II or a 117.5-kDa protein with guanylyltransferase and methyltransferase domains in a potentially dynamic interaction. The TbEIF4G2/TbEIF4E5 complex was associated with a 17.9-kDa hypothetical protein and both 14-3-3 variants I and II. Knockdown of TbEIF4E5 resulted in the loss of productive cell movement, as evidenced by the inability of the cells to remain in suspension in liquid culture and the loss of social motility on semisolid plating medium, as well as a minor reduction of translation. Cells appeared lethargic, as opposed to compromised in flagellar function per se. The minimal use of transcriptional control in kinetoplastids requires these organisms to implement downstream mechanisms to regulate gene expression, and the TbEIF4E5/TbEIF4G1/117.5-kDa complex in particular may be a key player in that process. We suggest that a pathway involved in cell motility is affected, directly or indirectly, by one of the TbEIF4E5 complexes.

Indexed as

RNA Processing, Post-TranscriptionalAmino Acid SequenceEukaryotic Initiation Factor-4EEukaryotic Initiation Factor-4GGene Knockout TechniquesHumansMolecular Sequence DataProtein BindingRNA Cap-Binding ProteinsRNA CapsRNA, ProtozoanSequence AlignmentTrypanosoma brucei bruceiEukaryotic Initiation Factor-4EEukaryotic Initiation Factor-4GRNA Cap-Binding ProteinsRNA CapsRNA, Protozoan14-3-3 proteinkinetoplastidmRNA capsocial motilitytranslation initiation factor

Identifiers

PMID24962368
PMCPMC4105752
OpenAlexW2107248794

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.