Evidence map›Paper›PMID 24962160›Full record

ArticleJournal of visualized experiments : JoVE2014

Reconstitution Of β-catenin degradation in Xenopus egg extract.

Tony W Chen, Matthew R Broadus, Stacey S Huppert, Ethan Lee

Abstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Chemical Screening Using Cell-FreeCold Spring Harbor protocols · 2018
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Tony W ChenDepartment of Cell and Developmental Biology and Program in Developmental Biology, Vanderbilt University Medical Center.
Matthew R BroadusDepartment of Cell and Developmental Biology and Program in Developmental Biology, Vanderbilt University Medical Center.
Stacey S HuppertDivision of Gastroenterology, Hepatology & Nutrition and Division of Developmental Biology, Cincinnati Children's Hospital Medical Center.
Ethan LeeDepartment of Cell and Developmental Biology and Program in Developmental Biology, Vanderbilt University Medical Center; Vanderbilt Ingram Cancer Center, Vanderbilt University School of Medicine; ethan.lee@vanderbilt.edu.
Vanderbilt University Medical Center · USMedical Center Hospital · USVanderbilt University · US

Funding

Integrated Biological Systems Training in OncologyT32CA119925 · NCI · VANDERBILT UNIVERSITY · PI Vivian Gama, William Patrick Tansey · 2008 to 2026
$7.6M
Regulation of beta-catenin degradation during Wnt signal transductionR01GM081635 · NIGMS · VANDERBILT UNIVERSITY · PI LEE, ETHAN · 2007 to 2016
$2.4M
Molecular requirements for proliferation of fetal and adult liver progenitorsR01DK078640 · NIDDK · VANDERBILT UNIVERSITY · PI HUPPERT, STACEY S · 2008 to 2012
$1.5M
Role of ubiquitination in the Wnt pathwayR01GM103926 · NIGMS · VANDERBILT UNIVERSITY · PI LEE, ETHAN · 2013 to 2016
$1.2M
NCI NIH HHS T32 CA119925NIDDK NIH HHS R01 DK078640NIDDK NIH HHS R01DK078640NIGMS NIH HHS R01 GM081635NIGMS NIH HHS R01GM081635NIGMS NIH HHS R01 GM103926NIGMS NIH HHS R01GM103926
6 · The paper itself

Abstract

Xenopus laevis egg extract is a well-characterized, robust system for studying the biochemistry of diverse cellular processes. Xenopus egg extract has been used to study protein turnover in many cellular contexts, including the cell cycle and signal transduction pathways(1-3). Herein, a method is described for isolating Xenopus egg extract that has been optimized to promote the degradation of the critical Wnt pathway component, β-catenin. Two different methods are described to assess β-catenin protein degradation in Xenopus egg extract. One method is visually informative ([(35)S]-radiolabeled proteins), while the other is more readily scaled for high-throughput assays (firefly luciferase-tagged fusion proteins). The techniques described can be used to, but are not limited to, assess β-catenin protein turnover and identify molecular components contributing to its turnover. Additionally, the ability to purify large volumes of homogenous Xenopus egg extract combined with the quantitative and facile readout of luciferase-tagged proteins allows this system to be easily adapted for high-throughput screening for modulators of β-catenin degradation.

Indexed as

Animalsbeta CateninFemaleOvumXenopus laevisbeta Catenin

Identifiers

PMID24962160
PMCPMC4133086
OpenAlexW2081557051

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.