Evidence map›Paper›PMID 24961323›Full record

ArticleBMC microbiology2014

Genome sequence and phenotypic analysis of a first German Francisella sp. isolate (W12-1067) not belonging to the species Francisella tularensis.

Kerstin Rydzewski, Tino Schulz, Elzbieta Brzuszkiewicz, Gudrun Holland, Christian Lück, Jens Fleischer, Roland Grunow, Klaus Heuner

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
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  6. Reorganized Genomic Taxonomy ofMicroorganisms · 2021
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  7. Microorganisms · 2020
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  8. Exploring the Diversity Within the GenusFrontiers in microbiology · 2020
    Article
  9. Molecular identification of the source of an uncommon tularaemia outbreak, Germany, autumn 2016.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2019
    Article
  10. Tularemia as a waterborne disease: a review.Emerging microbes & infections · 2019
    Review
  11. Genetic Diversity and Spatial Segregation ofFrontiers in cellular and infection microbiology · 2019
    Article
  12. Construction of a New Phage Integration Vector pFIV-Val for Use in DifferentFrontiers in cellular and infection microbiology · 2018
    Article
  13. RevisitingFrontiers in microbiology · 2018
    Article
  14. Tularemia in Germany-A Re-emerging Zoonosis.Frontiers in cellular and infection microbiology · 2018
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Characterization of Francisella species isolated from the cooling water of an air conditioning system.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology]
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Kerstin Rydzewski
Tino Schulz
Elzbieta Brzuszkiewicz
Gudrun Holland
Christian Lück
Jens Fleischer
Roland Grunow
Klaus HeunerCellular Interactions of Bacterial Pathogens, Centre for Biological Threats and Special Pathogens, Division 2 (ZBS 2), Robert Koch Institute, Nordufer 20, Berlin 13353, Germany. heunerk@rki.de.
Robert Koch Institute · DELandesgesundheitsamt Baden-Württemberg · DETU Dresden · DEUniversity of Göttingen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundFrancisella isolates from patients suffering from tularemia in Germany are generally strains of the species F. tularensis subsp. holarctica. To our knowledge, no other Francisella species are known for Germany. Recently, a new Francisella species could be isolated from a water reservoir of a cooling tower in Germany.

resultsWe identified a Francisella sp. (isolate W12-1067) whose 16S rDNA is 99% identical to the respective nucleotide sequence of the recently published strain F. guangzhouensis. The overall sequence identity of the fopA, gyrA, rpoA, groEL, sdhA and dnaK genes is only 89%, indicating that strain W12-1067 is not identical to F. guangzhouensis. W12-1067 was isolated from a water reservoir of a cooling tower of a hospital in Germany. The growth optimum of the isolate is approximately 30°C, it can grow in the presence of 4-5% NaCl (halotolerant) and is able to grow without additional cysteine within the medium. The strain was able to replicate within a mouse-derived macrophage-like cell line. The whole genome of the strain was sequenced (~1.7 mbp, 32.2% G + C content) and the draft genome was annotated. Various virulence genes common to the genus Francisella are present, but the Francisella pathogenicity island (FPI) is missing. However, another putative type-VI secretion system is present within the genome of strain W12-1067.

conclusionsIsolate W12-1067 is closely related to the recently described F. guangzhouensis species and it replicates within eukaryotic host cells. Since W12-1067 exhibits a putative new type-VI secretion system and F. tularensis subsp. holarctica was found not to be the sole species in Germany, the new isolate is an interesting species to be analyzed in more detail. Further research is needed to investigate the epidemiology, ecology and pathogenicity of Francisella species present in Germany.

Indexed as

Genome, BacterialSequence Analysis, DNAWater MicrobiologyAnimalsCell LineCluster AnalysisDNA, BacterialFrancisellaGermanyHumansMacrophagesMiceMolecular Sequence DataSequence HomologySodium ChlorideTemperatureDNA, BacterialSodium ChlorideVirulence Factors

Identifiers

PMID24961323
PMCPMC4230796
OpenAlexW2141569007

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.