Evidence map›Paper›PMID 24960695›Full record

ArticleDevelopmental cell2014

Regulation of gene expression through a transcriptional repressor that senses acyl-chain length in membrane phospholipids.

Harald F Hofbauer, Florian H Schopf, Hannes Schleifer, Oskar L Knittelfelder, Bartholomäus Pieber, Gerald N Rechberger, Heimo Wolinski, Maria L Gaspar, C Oliver Kappe, Johannes Stadlmann and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Developmental cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
6.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 93 citations in OpenAlex.

  1. Article
  2. Inositol biosynthesis is inversely regulated by glycolytic activity.Biochimica et biophysica acta. Molecular and cell biology of lipids · 2026
    Article
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  5. Review
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  9. Salicylic Acid Enhances Heat Stress Resistance ofAntioxidants (Basel, Switzerland) · 2022
    Article
  10. Article
  11. Article
  12. Science translational medicine · 2021
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Phosphatidate-mediated regulation of lipid synthesis at the nuclear/endoplasmic reticulum membrane.Biochimica et biophysica acta. Molecular and cell biology of lipids · 2020
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 2 countries.

Harald F HofbauerInstitute of Molecular Biosciences, University of Graz, Humboldtstrasse 50/II, 8010 Graz, Austria.
Florian H SchopfInstitute of Molecular Biosciences, University of Graz, Humboldtstrasse 50/II, 8010 Graz, Austria.
Hannes SchleiferInstitute of Molecular Biosciences, University of Graz, Humboldtstrasse 50/II, 8010 Graz, Austria.
Oskar L KnittelfelderInstitute of Molecular Biosciences, University of Graz, Humboldtstrasse 50/II, 8010 Graz, Austria.
Bartholomäus PieberInstitute of Chemistry, University of Graz, Heinrichstrasse 28, 8010 Graz, Austria.
Gerald N RechbergerInstitute of Molecular Biosciences, University of Graz, Humboldtstrasse 50/II, 8010 Graz, Austria; BioTechMed Graz, 8010 Graz, Austria.
Heimo WolinskiInstitute of Molecular Biosciences, University of Graz, Humboldtstrasse 50/II, 8010 Graz, Austria; BioTechMed Graz, 8010 Graz, Austria.
Maria L GasparDepartment of Molecular Biology and Genetics, 249 Biotechnology Building, Cornell University, Ithaca, NY 14853-2703, USA.
C Oliver KappeInstitute of Chemistry, University of Graz, Heinrichstrasse 28, 8010 Graz, Austria.
Johannes StadlmannProtein Chemistry Facility, Institute of Molecular Pathology (IMP), Doktor-Bohr-Gasse 7, 1030 Vienna, Austria.
Karl MechtlerProtein Chemistry Facility, IMBA Institute of Molecular Biotechnology of the Austrian Academy of Sciences, Doktor-Bohr-Gasse 3, 1030 Vienna, Austria.
Alexandra ZenzInstitute of Molecular Biosciences, University of Graz, Humboldtstrasse 50/II, 8010 Graz, Austria.
Karl LohnerInstitute of Molecular Biosciences, University of Graz, Humboldtstrasse 50/II, 8010 Graz, Austria; BioTechMed Graz, 8010 Graz, Austria.
Oksana TehlivetsInstitute of Molecular Biosciences, University of Graz, Humboldtstrasse 50/II, 8010 Graz, Austria; BioTechMed Graz, 8010 Graz, Austria.
Susan A HenryDepartment of Molecular Biology and Genetics, 249 Biotechnology Building, Cornell University, Ithaca, NY 14853-2703, USA.
Sepp D KohlweinInstitute of Molecular Biosciences, University of Graz, Humboldtstrasse 50/II, 8010 Graz, Austria; BioTechMed Graz, 8010 Graz, Austria. Electronic address: sepp.kohlwein@uni-graz.at.
University of Graz · ATBioTechMed-Graz · ATCornell University · USInstitute of Molecular Biotechnology · ATResearch Institute of Molecular Pathology · AT

Funding

GENETICS AND DEVELOPMENT OF YEAST MEMBRANE MUTANTSR01GM019629 · NIGMS · YESHIVA UNIVERSITY · PI HENRY, SUSAN ARMSTRONG · 1985 to 2015
$6.0M
GENETIC REGULATION OF PHOSPHOLIPID SYNTHESIS IN YEASTR37GM019629 · NIGMS · CORNELL UNIVERSITY ITHACA · PI HENRY, SUSAN A. · 1991 to 2000
$426k
STRUCTURE/FUNCTION ANALYSIS OF PHA4 IN C ELEGANSF32GM019629 · NIGMS · UNIVERSITY OF UTAH · PI KALTENBACH, LINDA S · 1999 to 2001
$59k
NIGMS NIH HHS F32 GM019629NIGMS NIH HHS GM19629NIGMS NIH HHS R01 GM019629NIGMS NIH HHS R37 GM019629
6 · The paper itself

Abstract

Membrane phospholipids typically contain fatty acids (FAs) of 16 and 18 carbon atoms. This particular chain length is evolutionarily highly conserved and presumably provides maximum stability and dynamic properties to biological membranes in response to nutritional or environmental cues. Here, we show that the relative proportion of C16 versus C18 FAs is regulated by the activity of acetyl-CoA carboxylase (Acc1), the first and rate-limiting enzyme of FA de novo synthesis. Acc1 activity is attenuated by AMPK/Snf1-dependent phosphorylation, which is required to maintain an appropriate acyl-chain length distribution. Moreover, we find that the transcriptional repressor Opi1 preferentially binds to C16 over C18 phosphatidic acid (PA) species: thus, C16-chain containing PA sequesters Opi1 more effectively to the ER, enabling AMPK/Snf1 control of PA acyl-chain length to determine the degree of derepression of Opi1 target genes. These findings reveal an unexpected regulatory link between the major energy-sensing kinase, membrane lipid composition, and transcription.

Indexed as

Gene Expression Regulation, FungalAcetyltransferasesAMP-Activated Protein KinasesEndoplasmic ReticulumFatty AcidsMembrane LipidsMutationMyo-Inositol-1-Phosphate SynthasePhospholipidsPhosphorylationProtein Serine-Threonine KinasesRepressor ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAcetyltransferasesaminoglycoside N1-acetyltransferaseAMP-Activated Protein KinasesFatty AcidsINO1 protein, S cerevisiaeMembrane LipidsMyo-Inositol-1-Phosphate SynthaseOPI1 protein, S cerevisiaePhospholipidsProtein Serine-Threonine KinasesRepressor ProteinsSaccharomyces cerevisiae ProteinsSNF1-related protein kinases

Identifiers

PMID24960695
PMCPMC4070385
OpenAlexW2118362412

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.