Evidence map›Paper›PMID 24960658›Full record

ArticleBlood transfusion = Trasfusione del sangue2015

Molecular typing for the Indian blood group associated 252G>C single nucleotide polymorphism in a selected cohort of Australian blood donors.

Genghis H Lopez, Rhiannon S Mcbean, Brett Wilson, Darryl L Irwin, Yew-Wah Liew, Catherine A Hyland, Robert L Flower

Abstract read
In one paragraph

Article in Blood transfusion = Trasfusione del sangue, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Anti-JrHematology, transfusion and cell therapy · 2024
    Article
  3. Frequency of MiTransfusion medicine and hemotherapy : offizielles Organ der Deutschen Gesellschaft fur Transfusionsmedizin und Immunhamatologie · 2020
    Article
  4. Transfusion Medicine and Molecular Genetic Methods.International journal of preventive medicine · 2018
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Genghis H LopezResearch and Development Division, Australian Red Cross Blood Service, Queensland, Australia.
Rhiannon S McbeanResearch and Development Division, Australian Red Cross Blood Service, Queensland, Australia.
Brett WilsonRed Cell Reference Laboratory, Australian Red Cross Blood Service, Queensland, Australia.
Darryl L IrwinSequenom Inc. Asia Pacific, Herston, Queensland, Australia.
Yew-Wah LiewRed Cell Reference Laboratory, Australian Red Cross Blood Service, Queensland, Australia.
Catherine A HylandResearch and Development Division, Australian Red Cross Blood Service, Queensland, Australia.
Robert L FlowerResearch and Development Division, Australian Red Cross Blood Service, Queensland, Australia.
Australian Red Cross Lifeblood · AUQueensland Health · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe Indian blood group antigens, In(a) and In(b), are clinically significant in transfusion medicine. However, antisera to type these antigens are difficult to obtain. The In(b) antigen is a high frequency antigen present in all populations, while the frequency of the antithetical In(a) ranges from 0.1% in Caucasians up to 11% in Middle Eastern groups. This antigen polymorphism is encoded by the single nucleotide polymorphism (SNP) 252G>C in CD44. The aim of this study was to establish and compare two genotyping methods to measure the frequency of the IN*A and IN*B alleles in a blood donor cohort. MATERIALS AND

methodsDonor blood samples (n=151) were genotyped by a novel real-time polymerase chain reaction (PCR) high-resolution meltcurve (HRM) analysis and a custom matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry (MALDI-TOF MS) assay. Samples with the rare IN*A allele were further investigated by nucleotide sequencing, red cell agglutination, and flow cytometry techniques.

resultsIn this study group, 149 IN*B homozygous and 2 IN*A/B heterozygous samples were detected with 100% concordance between HRM and MALDI-TOF MS methods. For PCR HRM, amplicon melting alone did not differentiate IN*A and IN*B alleles (class 3 SNP), however, the introduction of an unlabelled probe (UP) increased the resolution of the assay. Sequencing confirmed that the two non-homozygous samples were IN*A/B heterozygous and phenotyping by red cell agglutination, and flow cytometry confirmed both In(a) and In(b) antigens were present as predicted. DISCUSSION: Genotyping permits conservation of rare antisera to predict blood group antigen phenotype. In PCR UP-HRM the IN*A and IN*B alleles were discriminated on the basis of their melting properties. The In(a) frequency in this selected donor population was 1.3%. Application of genotyping methods such as these assists in identifying donors with rare blood group phenotypes of potential clinical significance.

Indexed as

AllelesBlood DonorsGene FrequencyPolymorphism, Single NucleotideAustraliaCohort StudiesFemaleGenotyping TechniquesHumansHyaluronan ReceptorsMaleCD44 protein, humanHyaluronan Receptors

Identifiers

PMID24960658
PMCPMC4317094
OpenAlexW206243468

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.