Evidence map›Paper›PMID 24959723›Full record

ArticlePloS one2014

Non-heme-binding domains and segments of the Staphylococcus aureus IsdB protein critically contribute to the kinetics and equilibrium of heme acquisition from methemoglobin.

Hui Zhu, Dengfeng Li, Mengyao Liu, Valerie Copié, Benfang Lei

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 22 citations in OpenAlex.

  1. Cryo-EM provides insight into how thebioRxiv : the preprint server for biology · 2026
    Article
  2. Hemoglobin receptor redundancy inJournal of structural biology: X · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Cryo-EM structures of staphylococcal IsdB bound to human hemoglobin reveal the process of heme extraction.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  7. Article
  8. Article
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  10. TheThe Journal of biological chemistry · 2018
    Article
  11. Energetics underlying hemin extraction from human hemoglobin byThe Journal of biological chemistry · 2018
    Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Hui ZhuDepartment of Microbiology and Immunology, Montana State University, Bozeman, Montana, United States of America; Department of Physiology, Harbin Medical University, Harbin, People's Republic of China.
Dengfeng LiDepartment of Microbiology and Immunology, Montana State University, Bozeman, Montana, United States of America.
Mengyao LiuDepartment of Microbiology and Immunology, Montana State University, Bozeman, Montana, United States of America.
Valerie CopiéDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, Montana, United States of America.
Benfang LeiDepartment of Microbiology and Immunology, Montana State University, Bozeman, Montana, United States of America.
Montana State University · USHarbin Medical University · CN

Funding

Center for Zoonotic and Emerging Infectious DiseasesP20GM103500 · NIGMS · MONTANA STATE UNIVERSITY - BOZEMAN · PI QUINN, MARK T · 2012 to 2013
$4.2M
Evasion of Innate Immunity by Group A StreptococcusR01AI095704 · NIAID · MONTANA STATE UNIVERSITY - BOZEMAN · PI LEI, BENFANG · 2012 to 2016
$1.8M
Vaccine and therapeutic antibodies against Group A StreptococcusR21AI097703 · NIAID · MONTANA STATE UNIVERSITY - BOZEMAN · PI LEI, BENFANG · 2012 to 2013
$385k
NIAID NIH HHS AI095704NIAID NIH HHS R01 AI095704NIAID NIH HHS R01AI095704NIAID NIH HHS R21 AI097703NIGMS NIH HHS GM103500-09NIGMS NIH HHS P20 GM103500
6 · The paper itself

Abstract

The hemoglobin receptor IsdB rapidly acquires heme from methemoglobin (metHb) in the heme acquisition pathway of Staphylococcus aureus. IsdB consists of N-terminal segment (NS), NEAT1 (N1), middle (MD), and heme binding NEAT2 (N2) domains, and C-terminal segment (CS). This study aims to elucidate the roles of these domains or segments in the metHb/IsdB reaction. Deletion of CS does not alter the kinetics and equilibrium of the reaction. Sequential deletions of NS and N1 in NS-N1-MD-N2 progressively reduce heme transfer rates and change the kinetic pattern from one to two phases, but have no effect on the equilibrium of the heme transfer reaction, whereas further deletion of MD reduces the percentage of transferred metHb heme. MD-N2 has higher affinity for heme than N2. MD in trans reduces rates of heme dissociation from holo-N2 and increases the percentage of metHb heme captured by N2 by 4.5 fold. NS-N1-MD and N2, but not NS-N1, MD, and N2, reconstitute the rapid metHb/IsdB reaction. NS-N1-MD-NIsdC, a fusion protein of NS-N1-MD and the NEAT domain of IsdC, slowly acquires heme from metHb by itself but together with N2 results in rapid heme loss from metHb. Thus, NS-N1 and MD domains specifically and critically contribute to the kinetics and equilibrium of the metHb/IsdB reaction, respectively. These findings support a mechanism of direct heme acquisition by IsdB in which MD enhances the affinity of N2 for heme to thermodynamically drive heme transfer from metHb to IsdB and in which NS is required for the rapid and single phase kinetics of the metHb/IsdB reaction.

Indexed as

Protein Interaction Domains and MotifsCation Transport ProteinsHemeKineticsMethemoglobinProtein BindingRecombinant ProteinsStaphylococcus aureusCation Transport ProteinsHemeIsdB protein, Staphylococcus aureusMethemoglobinRecombinant Proteins

Identifiers

PMID24959723
PMCPMC4069089
OpenAlexW1990035521

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.