Evidence map›Paper›PMID 24959201›Full record

ArticleMolecular cytogenetics2014

Chromosome 15q11-q13 copy number gain detected by array-CGH in two cases with a maternal methylation pattern.

Ee-Shien Tan, Min-Hwee Yong, Eileen Cp Lim, Zhi-Hui Li, Maggie Sy Brett, Ene-Choo Tan

Open access · goldAbstract read
In one paragraph

Article in Molecular cytogenetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.4field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Ee-Shien TanGenetics Service, KK Women's & Children's Hospital, 100 Bukit Timah Road 229899 Singapore, Singapore.
Min-Hwee YongCytogenetics Laboratory, KK Women's & Children's Hospital, 100 Bukit Timah Road 229899 Singapore, Singapore.
Eileen Cp LimKK Research Laboratory, KK Women's & Children's Hospital, 100 Bukit Timah Road 229899 Singapore, Singapore.
Zhi-Hui LiGenomax Technologies Pte Ltd, 51 Science Park Road, #04-15 117586 Singapore, Singapore.
Maggie Sy BrettKK Research Laboratory, KK Women's & Children's Hospital, 100 Bukit Timah Road 229899 Singapore, Singapore.
Ene-Choo TanKK Research Laboratory, KK Women's & Children's Hospital, 100 Bukit Timah Road 229899 Singapore, Singapore ; Office of Clinical Sciences, Duke-NUS Graduate Medical School, 8 College Road 169857 Singapore, Singapore.
KK Women's and Children's Hospital · SGDuke-NUS Medical School · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe 15q11-q13 region contains many low copy repeats and is well known for its genomic instability. Several syndromes are associated with genomic imbalance or copy-number-neutral uniparental disomy. We report on two patients: Patient 1 is a boy with developmental delay and autism; and Patient 2 is a girl with developmental delay, hypotonia and dysmorphism. We performed analyses to delineate their dosage in the 15q region, determine whether the patients' dosage correlates with phenotypic severity, and whether genes in the amplified regions are significantly associated with identified functional networks.

resultsFor the proximal region of 15q, molecular cytogenetic analysis with Agilent oligonucleotide array showed a copy number of 3 for Patient 1 and a copy number of 4 for Patient 2. Fluorescent in situ hybridization analysis of Patient 2 showed two different populations of cells with different marker chromosomes. Methylation analysis of the amplified region showed that the extra copies of small nuclear ribonucleoprotein polypeptide N gene were of maternal origin. Phenotypic severity did not correlate with the size and dosage of 15q, or whether the amplification is interstitial or in the form of a supernumerary marker. Pathway analysis showed that in Patient 2, the main functional networks that are affected by the genes from the duplicated/triplicated regions are developmental disorder, neurological disease and hereditary disease.

conclusionsThe 15q11-q13 gains that were found in both patients could explain their phenotypic presentations. This report expands the cohort of patients for which 15q11-q13 duplications are molecularly characterized.

Indexed as

15q duplication syndromeArray comparative genomic hybridization (aCGH)AutismCopy number gainDevelopmental delayFluorescence in situ hybridization (FISH)Marker chromosome

Identifiers

PMID24959201
PMCPMC4067100
OpenAlexW2158406017

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.