Evidence map›Paper›PMID 24958725›Full record

ArticleThe Journal of biological chemistry2014

Structure and function of the bacterial heterodimeric ABC transporter CydDC: stimulation of ATPase activity by thiol and heme compounds.

Masao Yamashita, Mark Shepherd, Wesley I Booth, Hao Xie, Vincent Postis, Yvonne Nyathi, Svetomir B Tzokov, Robert K Poole, Stephen A Baldwin, Per A Bullough

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Bacterial Oxidases of the CytochromeAntioxidants & redox signaling · 2021
    Review
  7. CydDC functions as a cytoplasmic cystine reductase to sensitizeProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  8. Article
  9. A heme-binding domain controls regulation of ATP-dependent potassium channels.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Masao YamashitaKrebs Institute for Biomolecular Research, Department of Molecular Biology and Biotechnology, The University of Sheffield, Sheffield S10 2TN, United Kingdom and.
Mark ShepherdKrebs Institute for Biomolecular Research, Department of Molecular Biology and Biotechnology, The University of Sheffield, Sheffield S10 2TN, United Kingdom and.
Wesley I BoothKrebs Institute for Biomolecular Research, Department of Molecular Biology and Biotechnology, The University of Sheffield, Sheffield S10 2TN, United Kingdom and.
Hao XieSchool of Biomedical Sciences, The Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds LS2 9JT, United Kingdom.
Vincent PostisSchool of Biomedical Sciences, The Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds LS2 9JT, United Kingdom.
Yvonne NyathiSchool of Biomedical Sciences, The Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds LS2 9JT, United Kingdom.
Svetomir B TzokovKrebs Institute for Biomolecular Research, Department of Molecular Biology and Biotechnology, The University of Sheffield, Sheffield S10 2TN, United Kingdom and.
Robert K PooleKrebs Institute for Biomolecular Research, Department of Molecular Biology and Biotechnology, The University of Sheffield, Sheffield S10 2TN, United Kingdom and.
Stephen A BaldwinSchool of Biomedical Sciences, The Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds LS2 9JT, United Kingdom.
Per A BulloughKrebs Institute for Biomolecular Research, Department of Molecular Biology and Biotechnology, The University of Sheffield, Sheffield S10 2TN, United Kingdom and. Electronic address: p.bullough@sheffield.ac.uk.
University of Sheffield · GBUniversity of Leeds · GB

Funding

Biotechnology and Biological Sciences Research Council BB/C514174/1Biotechnology and Biological Sciences Research Council BB/H016805/1Biotechnology and Biological Sciences Research Council BBS/B/14418
6 · The paper itself

Abstract

In Escherichia coli, the biogenesis of both cytochrome bd-type quinol oxidases and periplasmic cytochromes requires the ATP-binding cassette-type cysteine/GSH transporter, CydDC. Recombinant CydDC was purified as a heterodimer and found to be an active ATPase both in soluble form with detergent and when reconstituted into a lipid environment. Two-dimensional crystals of CydDC were analyzed by electron cryomicroscopy, and the protein was shown to be made up of two non-identical domains corresponding to the putative CydD and CydC subunits, with dimensions characteristic of other ATP-binding cassette transporters. CydDC binds heme b. Detergent-solubilized CydDC appears to adopt at least two structural states, each associated with a characteristic level of bound heme. The purified protein in detergent showed a weak basal ATPase activity (approximately 100 nmol Pi/min/mg) that was stimulated ∼3-fold by various thiol compounds, suggesting that CydDC could act as a thiol transporter. The presence of heme (either intrinsic or added in the form of hemin) led to a further enhancement of thiol-stimulated ATPase activity, although a large excess of heme inhibited activity. Similar responses of the ATPase activity were observed with CydDC reconstituted into E. coli lipids. These results suggest that heme may have a regulatory role in CydDC-mediated transmembrane thiol transport.

Indexed as

Protein MultimerizationAdenosine TriphosphatasesATP-Binding Cassette TransportersBiological Transport, ActiveEscherichia coliEscherichia coli ProteinsHemeProtein Structure, QuaternaryStructure-Activity RelationshipAdenosine TriphosphatasesATP-Binding Cassette TransportersCydC protein, E coliCydD protein, E coliEscherichia coli ProteinsHemeABC TransporterBacterial MetabolismMembrane ProteinMembrane Transporter ReconstitutionMicrobiologyProtein StructureStructural BiologyTransporter

Identifiers

PMID24958725
PMCPMC4132815
OpenAlexW2028546254

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.