Evidence map›Paper›PMID 24958263›Full record

ArticleMetabolites2013

Studies of Secondary Melanoma on C57BL/6J Mouse Liver Using 1H NMR Metabolomics.

Ju Feng, Nancy G Isern, Sarah D Burton, Jian Zhi Hu

Open access · goldAbstract read
In one paragraph

Article in Metabolites, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. One extraction tool forJournal of pharmaceutical analysis · 2021
    Article
  6. Article
  7. Article
  8. Review
  9. Melanoma Diagnosis Using Deep Learning and Fuzzy Logic.Diagnostics (Basel, Switzerland) · 2020
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Metabolomics : Official journal of the Metabolomic Society · 2014
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Ju FengPacific Northwest National Laboratory, 902 Battelle Blvd, Richland, WA 99352, USA. ju.feng@pnnl.gov.
Nancy G IsernPacific Northwest National Laboratory, 902 Battelle Blvd, Richland, WA 99352, USA. nancy.isern@pnnl.gov.
Sarah D BurtonPacific Northwest National Laboratory, 902 Battelle Blvd, Richland, WA 99352, USA. sarah.burton@pnnl.gov.
Jian Zhi HuPacific Northwest National Laboratory, 902 Battelle Blvd, Richland, WA 99352, USA. Jianzhi.Hu@pnnl.gov.
Battelle · USPacific Northwest National Laboratory · US

Funding

A 1.5-T superconducting solenoid-dipole magnet for a magic-angle spinning fieldR01EB013231 · NIBIB · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI IWASA, YUKIKAZU · 2011 to 2013
$1.9M
Slow-MAS NMR MetabolomicsR01ES022176 · NIEHS · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI HU, JIAN ZHI · 2012 to 2015
$1.6M
Development of a nanoliter slow-MAS NMR metabolomics probeR21RR025785 · NCRR · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI HU, JIAN ZHI · 2009 to 2010
$719k
NCRR NIH HHS R21 RR025785NIBIB NIH HHS R01 EB013231NIEHS NIH HHS R01 ES022176
6 · The paper itself

Abstract

NMR metabolomics, consisting of solid state high resolution magic angle spinning (HR-MAS) 1H-NMR, liquid state high resolution 1H-NMR, and principal components analysis (PCA) has been used to study secondary metastatic B16-F10 melanoma in C57BL/6J mouse liver. The melanoma group can be differentiated from its control group by PCA analysis of the estimates of absolute concentrations from liquid state 1H-NMR spectra on liver tissue extracts or by the estimates of absolute peak intensities of metabolites from 1H HR-MAS-NMR data on intact liver tissues. In particular, we found that the estimates of absolute concentrations of glutamate, creatine, fumarate and cholesterol are elevated in the melanoma group as compared to controls, while the estimates of absolute concentrations of succinate, glycine, glucose, and the family of linear lipids including long chain fatty acids, total choline and acyl glycerol are decreased. The ratio of glycerophosphocholine (GPC) to phosphocholine (PCho) is increased by about 1.5 fold in the melanoma group, while the estimate of absolute concentration of total choline is actually lower in melanoma mice. These results suggest the following picture in secondary melanoma metastasis: Linear lipid levels are decreased by beta oxidation in the melanoma group, which contributes to an increase in the synthesis of cholesterol, and also provides an energy source input for TCA cycle. These findings suggest a link between lipid oxidation, the TCA cycle and the hypoxia-inducible factors (HIF) signal pathway in tumor metastases. Thus, this study indicates that the metabolic profile derived from NMR analysis can provide a valuable bio-signature of malignancy and cell hypoxia in metastatic melanoma.

Identifiers

PMID24958263
PMCPMC3937829
OpenAlexW2126301712

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.