ArticleBMC bioinformatics2014
e!DAL--a framework to store, share and publish research data.
Article in BMC bioinformatics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.
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Who cites it
51 citing papers in PubMed.
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- A roadmap for a middleware as a federation service for integrative data retrieval of agricultural data.Journal of integrative bioinformatics · 2024Article
- Curation of historical phenotypic wheat data from the Czech Genebank for research and breeding.Scientific data · 2024Article
- Genomic resources for a historical collection of cultivated two-row European spring barley genotypes.Scientific data · 2024Article
- Grain yield trade-offs in spike-branching wheat can be mitigated by elite alleles affecting sink capacity and post-anthesis source activity.Journal of experimental botany · 2024Article
- Review
- Enhancing a Sphaerobacter thermophilus ω-transaminase for kinetic resolution of β- and γ-amino acids.AMB Express · 2023Article
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- Combined nitrogen and drought stress leads to overlapping and unique proteomic responses in potato.Planta · 2023Article
- Finding needles in a haystack: identification of inter-specific introgressions in wheat genebank collections using low-coverage sequencing data.Frontiers in plant science · 2023Article
- Genomic prediction reveals unexplored variation in grain protein and lysine content across a vast winter wheat genebank collection.Frontiers in plant science · 2023Article
- Article
- A technical guide to TRITEX, a computational pipeline for chromosome-scale sequence assembly of plant genomes.Plant methods · 2022Article
- Choosing the right tool: Leveraging of plant genetic resources in wheat (Triticum aestivum L.) benefits from selection of a suitable genomic prediction model.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Unraveling metabolic patterns and molecular mechanisms underlying storability in sugar beet.BMC plant biology · 2022Article
- A catalogue of resistance gene homologs and a chromosome-scale reference sequence support resistance gene mapping in winter wheat.Plant biotechnology journal · 2022Article
- Initial Description of the Genome ofFrontiers in plant science · 2022Article
- Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases.Briefings in bioinformatics · 2021Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundThe life-science community faces a major challenge in handling "big data", highlighting the need for high quality infrastructures capable of sharing and publishing research data. Data preservation, analysis, and publication are the three pillars in the "big data life cycle". The infrastructures currently available for managing and publishing data are often designed to meet domain-specific or project-specific requirements, resulting in the repeated development of proprietary solutions and lower quality data publication and preservation overall.
resultse!DAL is a lightweight software framework for publishing and sharing research data. Its main features are version tracking, metadata management, information retrieval, registration of persistent identifiers (DOI), an embedded HTTP(S) server for public data access, access as a network file system, and a scalable storage backend. e!DAL is available as an API for local non-shared storage and as a remote API featuring distributed applications. It can be deployed "out-of-the-box" as an on-site repository.
conclusionse!DAL was developed based on experiences coming from decades of research data management at the Leibniz Institute of Plant Genetics and Crop Plant Research (IPK). Initially developed as a data publication and documentation infrastructure for the IPK's role as a data center in the DataCite consortium, e!DAL has grown towards being a general data archiving and publication infrastructure. The e!DAL software has been deployed into the Maven Central Repository. Documentation and Software are also available at: http://edal.ipk-gatersleben.de.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.