Evidence map›Paper›PMID 24957674›Full record

ArticleEMBO reports2014

Yeast X-chromosome-associated protein 5 (Xap5) functions with H2A.Z to suppress aberrant transcripts.

Shajahan Anver, Assen Roguev, Martin Zofall, Nevan J Krogan, Shiv I S Grewal, Stacey L Harmer

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
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  7. New class of transcription factors controls flagellar assembly by recruiting RNA polymerase II inProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  8. Frontiers in plant science · 2017
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Shajahan AnverDepartment of Plant Biology, College of Biological Sciences University of California, Davis, CA, USA.
Assen RoguevDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, CA, USA.
Martin ZofallLaboratory of Biochemistry and Molecular Biology, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA.
Nevan J KroganDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, CA, USA.
Shiv I S GrewalLaboratory of Biochemistry and Molecular Biology, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA.
Stacey L HarmerDepartment of Plant Biology, College of Biological Sciences University of California, Davis, CA, USA slharmer@ucdavis.edu.
University of California, Davis · USUniversity of California, San Francisco · USCenter for Cancer Research · USNational Cancer Institute · US

Funding

Roles of Chromatin-modifying Factors in Epigenetic Control of the GenomeZIABC011208 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI GREWAL, SHIVINDER S · 2009 to 2025
$28.1M
Molecular analysis of circadian regulation in ArabidopsisR01GM069418 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI HARMER, STACEY L. · 2004 to 2016
$3.3M
NIGMS NIH HHS R01 GM069418
6 · The paper itself

Abstract

Chromatin regulatory proteins affect diverse developmental and environmental response pathways via their influence on nuclear processes such as the regulation of gene expression. Through a genome-wide genetic screen, we implicate a novel protein called X-chromosome-associated protein 5 (Xap5) in chromatin regulation. We show that Xap5 is a chromatin-associated protein acting in a similar manner as the histone variant H2A.Z to suppress expression of antisense and repeat element transcripts throughout the fission yeast genome. Xap5 is highly conserved across eukaryotes, and a plant homolog rescues xap5 mutant yeast. We propose that Xap5 likely functions as a chromatin regulator in diverse organisms.

Indexed as

Antisense Elements (Genetics)ArabidopsisArabidopsis ProteinsDNA-Binding ProteinsGenes, FungalGenetic Complementation TestHistonesProtein BindingRepetitive Sequences, Nucleic AcidRNA, FungalRNA, MessengerSchizosaccharomycesSchizosaccharomyces pombe ProteinsTranscription, GeneticUp-RegulationAntisense Elements (Genetics)Arabidopsis ProteinsDNA-Binding ProteinsHistonesPHT1 protein, S pombeRNA, FungalRNA, MessengerSchizosaccharomyces pombe ProteinsXap5 protein, S pombeaberrant transcriptschromatin modificationlong terminal repeatstranscriptional repressiontransposable elements

Identifiers

PMID24957674
PMCPMC4197047
OpenAlexW2077597750

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.