Evidence map›Paper›PMID 24957606›Full record

ArticleNucleic acids research2014

ATM regulates NF-κB-dependent immediate-early genes via RelA Ser 276 phosphorylation coupled to CDK9 promoter recruitment.

Ling Fang, Sanjeev Choudhary, Yingxin Zhao, Chukwudi B Edeh, Chunying Yang, Istvan Boldogh, Allan R Brasier

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 68 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Methylation ofJournal of translational internal medicine · 2024
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  8. Article
  9. Article
  10. Article
  11. Review
  12. DNA damage and repair in age-related inflammation.Nature reviews. Immunology · 2023
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Ling FangDepartment of Internal Medicine, University of Texas Medical Branch (UTMB), 301 University Blvd, Galveston, TX 77555 USA Department of Biochemistry and Molecular Biology, UTMB, Galveston, TX 77555, USA.
Sanjeev ChoudharyDepartment of Internal Medicine, University of Texas Medical Branch (UTMB), 301 University Blvd, Galveston, TX 77555 USA Sealy Center for Molecular Medicine, UTMB, 301 University Blvd, Galveston, TX 77555, USA Institute for Translational Sciences, UTMB, 301 University Blvd, Galveston, TX 77555, USA.
Yingxin ZhaoDepartment of Internal Medicine, University of Texas Medical Branch (UTMB), 301 University Blvd, Galveston, TX 77555 USA Sealy Center for Molecular Medicine, UTMB, 301 University Blvd, Galveston, TX 77555, USA Institute for Translational Sciences, UTMB, 301 University Blvd, Galveston, TX 77555, USA.
Chukwudi B EdehDepartment of Internal Medicine, University of Texas Medical Branch (UTMB), 301 University Blvd, Galveston, TX 77555 USA.
Chunying YangDepartment of Radiation Oncology, Houston Methodist Research Institute, Weill Cornell University, Houston, TX 77030, USA.
Istvan BoldoghSealy Center for Molecular Medicine, UTMB, 301 University Blvd, Galveston, TX 77555, USA Department of Microbiology and Immunology, UTMB, 301 University Blvd, Galveston, TX 77555, USA.
Allan R BrasierDepartment of Internal Medicine, University of Texas Medical Branch (UTMB), 301 University Blvd, Galveston, TX 77555 USA Sealy Center for Molecular Medicine, UTMB, 301 University Blvd, Galveston, TX 77555, USA Institute for Translational Sciences, UTMB, 301 University Blvd, Galveston, TX 77555, USA arbrasie@utmb.edu.
The University of Texas Medical Branch at Galveston · USJohn Sealy Hospital · USCornell University · US

Funding

Virus, Tissue Culture and ImmunoassayP01AI062885 · NIAID · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI CASOLA, ANTONELLA · 2005 to 2022
$23.9M
Synthetic Organic Chemistry CoreP30ES006676 · NIEHS · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI ELFERINK, CORNELIS JOHAN · 1995 to 2017
$21.7M
UTMB Clinical and Translational Science AwardUL1TR000071 · NCATS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI BRASIER, ALLAN R. · 2012 to 2014
$14.4M
Linkage of Lung Inflammation to 8-oxoguanine and OGG1R01ES018948 · NIEHS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI BOLDOGH, ISTVAN STEVEN · 2010 to 2014
$1.5M
NCATS NIH HHS UL1 TR000071NCATS NIH HHS UL1TR000071NIAID NIH HHS P01 AI062885NIAID NIH HHS P01AI062885NIEHS NIH HHS P30 ES006676NIEHS NIH HHS R01 ES18948
6 · The paper itself

Abstract

Ataxia-telangiectasia mutated (ATM), a member of the phosphatidylinositol 3 kinase-like kinase family, is a master regulator of the double strand DNA break-repair pathway after genotoxic stress. Here, we found ATM serves as an essential regulator of TNF-induced NF-kB pathway. We observed that TNF exposure of cells rapidly induced DNA double strand breaks and activates ATM. TNF-induced ROS promote nuclear IKKγ association with ubiquitin and its complex formation with ATM for nuclear export. Activated cytoplasmic ATM is involved in the selective recruitment of the E3-ubiquitin ligase β-TrCP to phospho-IκBα proteosomal degradation. Importantly, ATM binds and activates the catalytic subunit of protein kinase A (PKAc), ribosmal S6 kinase that controls RelA Ser 276 phosphorylation. In ATM knockdown cells, TNF-induced RelA Ser 276 phosphorylation is significantly decreased. We further observed decreased binding and recruitment of the transcriptional elongation complex containing cyclin dependent kinase-9 (CDK9; a kinase necessary for triggering transcriptional elongation) to promoters of NF-κB-dependent immediate-early cytokine genes, in ATM knockdown cells. We conclude that ATM is a nuclear damage-response signal modulator of TNF-induced NF-κB activation that plays a key scaffolding role in IκBα degradation and RelA Ser 276 phosphorylation. Our study provides a mechanistic explanation of decreased innate immune response associated with A-T mutation.

Indexed as

Gene Expression RegulationGenes, Immediate-EarlyAtaxia Telangiectasia Mutated Proteinsbeta-Transducin Repeat-Containing ProteinsCell LineCell NucleusCyclic AMP-Dependent Protein Kinase Catalytic SubunitsCyclin-Dependent Kinase 9CytokinesHumansI-kappa B KinaseI-kappa B ProteinsNF-kappa BNF-KappaB Inhibitor alphaPhosphorylationPromoter Regions, GeneticAtaxia Telangiectasia Mutated Proteinsbeta-Transducin Repeat-Containing ProteinsCyclic AMP-Dependent Protein Kinase Catalytic SubunitsCyclin-Dependent Kinase 9CytokinesI-kappa B KinaseI-kappa B ProteinsNF-kappa BNF-KappaB Inhibitor alphaNFKBIA protein, humanSerineTranscription Factor RelATumor Necrosis Factor-alpha

Identifiers

PMID24957606
PMCPMC4117761
OpenAlexW2121679131

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.