Evidence map›Paper›PMID 24954025›Full record

ArticleDevelopmental cell2014

Independent genomic control of neuronal number across retinal cell types.

Patrick W Keeley, Irene E Whitney, Nils R Madsen, Ace J St John, Sarra Borhanian, Stephanie A Leong, Robert W Williams, Benjamin E Reese

Abstract readComparative Study
In one paragraph

Article in Developmental cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. The Journal of neuroscience : the official journal of the Society for Neuroscience · 2023
    Article
  4. Review
  5. Article
  6. Neurog2 regulates Isl1 to modulate horizontal cell number.Development (Cambridge, England) · 2023
    Article
  7. Primary Cilia in Amacrine Cells in Retinal Development.Investigative ophthalmology & visual science · 2021
    Article
  8. Review
  9. Article
  10. Interrelationships between Cellular Density, Mosaic Patterning, and Dendritic Coverage of VGluT3 Amacrine Cells.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2021
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Frontiers in neuroscience · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Patrick W KeeleyNeuroscience Research Institute, University of California, Santa Barbara, Santa Barbara, CA 93106, USA; Department of Molecular, Cellular, and Developmental Biology, University of California, Santa Barbara, Santa Barbara, CA 93106, USA.
Irene E WhitneyNeuroscience Research Institute, University of California, Santa Barbara, Santa Barbara, CA 93106, USA; Department of Molecular, Cellular, and Developmental Biology, University of California, Santa Barbara, Santa Barbara, CA 93106, USA.
Nils R MadsenNeuroscience Research Institute, University of California, Santa Barbara, Santa Barbara, CA 93106, USA.
Ace J St JohnNeuroscience Research Institute, University of California, Santa Barbara, Santa Barbara, CA 93106, USA.
Sarra BorhanianNeuroscience Research Institute, University of California, Santa Barbara, Santa Barbara, CA 93106, USA; Department of Molecular, Cellular, and Developmental Biology, University of California, Santa Barbara, Santa Barbara, CA 93106, USA.
Stephanie A LeongNeuroscience Research Institute, University of California, Santa Barbara, Santa Barbara, CA 93106, USA; Department of Molecular, Cellular, and Developmental Biology, University of California, Santa Barbara, Santa Barbara, CA 93106, USA.
Robert W WilliamsCenter of Genomics and Bioinformatics, University of Tennessee Health Science Center, Memphis, TN 38120, USA; Department of Anatomy and Neurobiology, University of Tennessee Health Science Center, Memphis, TN 38120, USA.
Benjamin E ReeseNeuroscience Research Institute, University of California, Santa Barbara, Santa Barbara, CA 93106, USA; Department of Psychological and Brain Sciences, University of California, Santa Barbara, Santa Barbara, CA 93106, USA. Electronic address: breese@psych.ucsb.edu.

Funding

Development of Retinal Bipolar CellsR01EY019968 · NEI · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI REESE, BENJAMIN E · 2010 to 2023
$4.9M
INIA-STRESS: Informatics and Analysis CoreU01AA016662 · NIAAA · VIRGINIA COMMONWEALTH UNIVERSITY · PI WILLIAMS, ROBERT W. · 2007 to 2016
$2.9M
Two-Photon Microscopy for Biomedical ResearchS10RR022585 · NCRR · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI REESE, BENJAMIN E · 2007 to 2007
$500k
NCRR NIH HHS RR-022585NCRR NIH HHS S10 RR022585NEI NIH HHS EY-019968NEI NIH HHS R01 EY019968NIAAA NIH HHS U01 AA016662
6 · The paper itself

Abstract

The sizes of different neuronal populations within the CNS are precisely controlled, but whether neuronal number is coordinated between cell types is unknown. We examined the covariance structure of 12 different retinal cell types across 30 genetically distinct lines of mice, finding minimal covariation when comparing synaptically connected or developmentally related cell types. Variation mapped to one or more genomic loci for each cell type, but rarely were these shared, indicating minimal genetic coregulation of final number. Multiple genes, therefore, participate in the specification of the size of every population of retinal neuron, yet genetic variants work largely independent of one another during development to modulate those numbers, yielding substantial variability in the convergence ratios between pre- and postsynaptic populations. Density-dependent cellular interactions in the outer plexiform layer overcome this variability to ensure the formation of neuronal circuits that maintain constant retinal coverage and complete afferent sampling.

Indexed as

GenomicsQuantitative Trait LociAnimalsCell CountCell DifferentiationCells, CulturedDendritic CellsFemaleMaleMiceMice, Inbred AMice, Inbred C57BLNeuronsRetinaSynapses

Identifiers

PMID24954025
PMCPMC4101151

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.