Evidence map›Paper›PMID 24952894›Full record

ArticleThe EMBO journal2014

Molecular mechanism of ligand recognition by membrane transport protein, Mhp1.

Katie J Simmons, Scott M Jackson, Florian Brueckner, Simon G Patching, Oliver Beckstein, Ekaterina Ivanova, Tian Geng, Simone Weyand, David Drew, Joseph Lanigan and 7 more

Abstract read
In one paragraph

Article in The EMBO journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

  1. Article
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  7. Article
  8. Integrated AlphaFold2 and DEER investigation of the conformational dynamics of a pH-dependent APC antiporter.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  9. Article
  10. Review
  11. Article
  12. Heteromeric Solute Carriers: Function, Structure, Pathology and Pharmacology.Advances in experimental medicine and biology · 2021
    Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Katie J SimmonsSchool of Chemistry and Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, UK.
Scott M JacksonSchool of Biomedical Sciences and Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, UK.
Florian BruecknerMembrane Protein Laboratory, Diamond Light Source Harwell Science and Innovation Campus, Chilton, Didcot, UK Division of Molecular Biosciences, Membrane Protein Crystallography Group Imperial College, London, UK Rutherford Appleton Laboratory, Research Complex at Harwell, Harwell, Oxford, Didcot, UK.
Simon G PatchingSchool of Biomedical Sciences and Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, UK.
Oliver BecksteinDepartment of Physics, Arizona State University, Tempe, AZ, USA Department of Biochemistry, University of Oxford, Oxford, UK.
Ekaterina IvanovaSchool of Biomedical Sciences and Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, UK.
Tian GengMembrane Protein Laboratory, Diamond Light Source Harwell Science and Innovation Campus, Chilton, Didcot, UK Division of Molecular Biosciences, Membrane Protein Crystallography Group Imperial College, London, UK Rutherford Appleton Laboratory, Research Complex at Harwell, Harwell, Oxford, Didcot, UK.
Simone WeyandMembrane Protein Laboratory, Diamond Light Source Harwell Science and Innovation Campus, Chilton, Didcot, UK Division of Molecular Biosciences, Membrane Protein Crystallography Group Imperial College, London, UK Rutherford Appleton Laboratory, Research Complex at Harwell, Harwell, Oxford, Didcot, UK.
David DrewDivision of Molecular Biosciences, Membrane Protein Crystallography Group Imperial College, London, UK.
Joseph LaniganSchool of Chemistry and Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, UK.
David J SharplesSchool of Biomedical Sciences and Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, UK.
Mark S P SansomDepartment of Biochemistry, University of Oxford, Oxford, UK.
So IwataMembrane Protein Laboratory, Diamond Light Source Harwell Science and Innovation Campus, Chilton, Didcot, UK Division of Molecular Biosciences, Membrane Protein Crystallography Group Imperial College, London, UK Rutherford Appleton Laboratory, Research Complex at Harwell, Harwell, Oxford, Didcot, UK.
Colin W G FishwickSchool of Chemistry and Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, UK p.j.f.henderson@leeds.ac.uk a.cameron@warwick.ac.uk c.w.g.fishwick@leeds.ac.uk.
A Peter JohnsonSchool of Chemistry and Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, UK.
Alexander D CameronMembrane Protein Laboratory, Diamond Light Source Harwell Science and Innovation Campus, Chilton, Didcot, UK Division of Molecular Biosciences, Membrane Protein Crystallography Group Imperial College, London, UK School of Life Sciences, University of Warwick, Coventry, UK p.j.f.henderson@leeds.ac.uk a.cameron@warwick.ac.uk c.w.g.fishwick@leeds.ac.uk.
Peter J F HendersonSchool of Biomedical Sciences and Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, UK p.j.f.henderson@leeds.ac.uk a.cameron@warwick.ac.uk c.w.g.fishwick@leeds.ac.uk.

Funding

Biotechnology and Biological Sciences Research Council B19456Biotechnology and Biological Sciences Research Council BB/C51725Biotechnology and Biological Sciences Research Council BB/C51725X/1Biotechnology and Biological Sciences Research Council BB/G020043/1Biotechnology and Biological Sciences Research Council BB/G023425/1Biotechnology and Biological Sciences Research Council BB/H000267/1Biotechnology and Biological Sciences Research Council BB/I019855/1Biotechnology and Biological Sciences Research Council BB/L002558/1Biotechnology and Biological Sciences Research Council BBS/B/16011Biotechnology and Biological Sciences Research Council BEP17032Wellcome TrustWellcome Trust WT089809
6 · The paper itself

Abstract

The hydantoin transporter Mhp1 is a sodium-coupled secondary active transport protein of the nucleobase-cation-symport family and a member of the widespread 5-helix inverted repeat superfamily of transporters. The structure of Mhp1 was previously solved in three different conformations providing insight into the molecular basis of the alternating access mechanism. Here, we elucidate detailed events of substrate binding, through a combination of crystallography, molecular dynamics, site-directed mutagenesis, biochemical/biophysical assays, and the design and synthesis of novel ligands. We show precisely where 5-substituted hydantoin substrates bind in an extended configuration at the interface of the bundle and hash domains. They are recognised through hydrogen bonds to the hydantoin moiety and the complementarity of the 5-substituent for a hydrophobic pocket in the protein. Furthermore, we describe a novel structure of an intermediate state of the protein with the external thin gate locked open by an inhibitor, 5-(2-naphthylmethyl)-L-hydantoin, which becomes a substrate when leucine 363 is changed to an alanine. We deduce the molecular events that underlie acquisition and transport of a ligand by Mhp1.

Indexed as

Bacterial ProteinsBinding SitesBiological TransportCrystallography, X-RayHydantoinsHydrogen BondingLigandsMicrococcaceaeModels, MolecularMolecular Dynamics SimulationMutagenesis, Site-DirectedMutationProtein ConformationStructure-Activity Relationship5-indolylmethylhydantoinBacterial Proteinshydantoin 454C77HydantoinsLigandsMhp1 protein, Mycoplasmafive helix inverted repeat superfamilyhydantoinmembrane transportMhp1molecular recognitionnucleobase‐cation‐symport, NCS1, family

Identifiers

PMID24952894
PMCPMC4195764

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.