Evidence map›Paper›PMID 24952503›Full record

ArticleNature immunology2014

Diverse intracellular pathogens activate type III interferon expression from peroxisomes.

Charlotte Odendall, Evelyn Dixit, Fabrizia Stavru, Helene Bierne, Kate M Franz, Ann Fiegen Durbin, Steeve Boulant, Lee Gehrke, Pascale Cossart, Jonathan C Kagan

Open access · greenAbstract read
In one paragraph

Article in Nature immunology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 263 papers.

0numbers the graph read from it
0cells of the map it votes in
263citing papers in PubMed
16.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

263 citing papers in PubMed, 369 citations in OpenAlex.

  1. Article
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  4. Review
  5. Modeling chronic infection withInfection and immunity · 2026
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  13. Review
  14. Review
  15. Mechanisms of Differential Signal Transduction by IFNLR1 Variants.bioRxiv : the preprint server for biology · 2025
    Article
  16. Review
  17. Review
  18. Article
  19. Article
  20. Article

203 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 3 countries.

Charlotte OdendallHarvard Medical School and Division of Gastroenterology, Boston Children's Hospital, Boston, Massachusetts, USA.
Evelyn Dixit1] Harvard Medical School and Division of Gastroenterology, Boston Children's Hospital, Boston, Massachusetts, USA. [2].
Fabrizia Stavru1] Institut Pasteur, Unité des Interactions Bactéries Cellules, Institut National de la Santé et de la Recherche Médicale U604, Institut national de la recherche agronomique (INRA) USC2020, Paris, France. [2].
Helene Bierne1] Institut Pasteur, Unité des Interactions Bactéries Cellules, Institut National de la Santé et de la Recherche Médicale U604, Institut national de la recherche agronomique (INRA) USC2020, Paris, France. [2].
Kate M FranzHarvard Medical School and Division of Gastroenterology, Boston Children's Hospital, Boston, Massachusetts, USA.
Ann Fiegen Durbin1] Department of Microbiology and Immunobiology, Harvard Medical School, Boston, Massachusetts, USA. [2] Institute for Medical Engineering and Science, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.
Steeve BoulantDepartment of Infectious Diseases, Virology Schaller research group at CellNetworks and Deutsches Krebsforschungszentrum (DKFZ), University of Heidelberg, Heidelberg, Germany.
Lee Gehrke1] Department of Microbiology and Immunobiology, Harvard Medical School, Boston, Massachusetts, USA. [2] Institute for Medical Engineering and Science, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.
Pascale CossartInstitut Pasteur, Unité des Interactions Bactéries Cellules, Institut National de la Santé et de la Recherche Médicale U604, Institut national de la recherche agronomique (INRA) USC2020, Paris, France.
Jonathan C KaganHarvard Medical School and Division of Gastroenterology, Boston Children's Hospital, Boston, Massachusetts, USA.
Boston Children's Hospital · USHarvard University · USInstitute for Medical Research · USGerman Cancer Research Center · DEInstitut Pasteur · FRMicrobiologie de l’alimentation au service de la santé · FR

Funding

STRUCTURE-FUNCTION RELATIONSHIPS IN THE ALIMENTARY TRACTP30DK034854 · NIDDK · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI JONATHAN C KAGAN · 1986 to 2026
$32.4M
Initiation and Regulation of Antiviral Innate ImmunityR01AI093589 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI KAGAN, JONATHAN C · 2011 to 2020
$4.4M
MMDx: A rapid multiplexed matrix code diagnostic for real time epidemiologyR33AI100190 · NIAID · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GEHRKE, LEE · 2014 to 2016
$1.6M
Initiation and Regulation of Antiviral Innate ImmunityR56AI093589 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI KAGAN, JONATHAN C · 2021 to 2021
$531k
Cellular and molecular aspects of Toll-like receptor signal transduction.R00AI072955 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI KAGAN, JONATHAN C · 2008 to 2009
$498k
Defining non-transcriptional innate immune responses to bacterial endotoxinR56AI103082 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI KAGAN, JONATHAN C · 2013 to 2013
$411k
Synergistic innate immune activation and cell killing by RIG-I ligands in HCV-HCCR21CA159132 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GEHRKE, LEE · 2012 to 2013
$374k
Cellular and molecular aspects of Toll-like receptor signal transduction.K99AI072955 · NIAID · YALE UNIVERSITY · PI KAGAN, JONATHAN C · 2007 to 2007
$90k
European Research Council 233348NCI NIH HHS CA159132NCI NIH HHS R21 CA159132NIAID NIH HHS AI072955NIAID NIH HHS AI093589NIAID NIH HHS K99 AI072955NIAID NIH HHS R01 AI093589NIAID NIH HHS R33 AI100190NIAID NIH HHS R56 AI093589NIAID NIH HHS R56 AI103082NIDDK NIH HHS P30 DK034854NIDDK NIH HHS P30 DK34854
6 · The paper itself

Abstract

Type I interferon responses are considered the primary means by which viral infections are controlled in mammals. Despite this view, several pathogens activate antiviral responses in the absence of type I interferons. The mechanisms controlling type I interferon-independent responses are undefined. We found that RIG-I like receptors (RLRs) induce type III interferon expression in a variety of human cell types, and identified factors that differentially regulate expression of type I and type III interferons. We identified peroxisomes as a primary site of initiation of type III interferon expression, and revealed that the process of intestinal epithelial cell differentiation upregulates peroxisome biogenesis and promotes robust type III interferon responses in human cells. These findings highlight the importance of different intracellular organelles in specific innate immune responses.

Indexed as

Immunity, InnateAnimalsAntineoplastic AgentsBenzimidazolesCell DifferentiationCell LineCyclohexanesDEAD Box Protein 58DEAD-box RNA HelicasesEnzyme InhibitorsHumansInterferonsIntestinal MucosaJanus Kinase 2Micep38 Mitogen-Activated Protein Kinases1,2,3,4,5,6-hexabromocyclohexane2-tert-butyl-9-fluoro-3,6-dihydro-7H-benz(h)imidazo(4,5-f)isoquinoline-7-onealpha-cyano-(3,4-dihydroxy)-N-benzylcinnamideAntineoplastic AgentsBenzimidazolesCyclohexanesDEAD Box Protein 58DEAD-box RNA HelicasesEnzyme InhibitorsfludarabineInterferonsJAK2 protein, humanJanus Kinase 2p38 Mitogen-Activated Protein KinasesPyridonesReceptors, ImmunologicRIGI protein, humanRNA, Small InterferingSTAT1 protein, humanSTAT1 Transcription FactorTyrphostinsVidarabine

Identifiers

PMID24952503
PMCPMC4106986
OpenAlexW2127245371

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.