Evidence map›Paper›PMID 24951833›Full record

ArticleJournal of molecular biology2014

NMR model of PrgI-SipD interaction and its implications in the needle-tip assembly of the Salmonella type III secretion system.

Thenmalarchelvi Rathinavelan, Maria Lara-Tejero, Matthew Lefebre, Srirupa Chatterjee, Andrew C McShan, Da-Chuan Guo, Chun Tang, Jorge E Galan, Roberto N De Guzman

Abstract read
In one paragraph

Article in Journal of molecular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Review
  6. Article
  7. Cryo-EM structure of the needle filament tip complex of theProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  8. Review
  9. Article
  10. Review
  11. Frontiers in microbiology · 2020
    Review
  12. Article
  13. The type III secretion system needle, tip, and translocon.Protein science : a publication of the Protein Society · 2019
    Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Single-domain antibodies pinpoint potential targets withinThe Journal of biological chemistry · 2017
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Thenmalarchelvi RathinavelanDepartment of Molecular Biosciences, University of Kansas, Lawrence, KS 66045, USA.
Maria Lara-TejeroDepartment of Microbial Pathogenesis, Yale University School of Medicine, 295 Congress Avenue, New Haven, CT 06536, USA.
Matthew LefebreDepartment of Microbial Pathogenesis, Yale University School of Medicine, 295 Congress Avenue, New Haven, CT 06536, USA.
Srirupa ChatterjeeDepartment of Molecular Biosciences, University of Kansas, Lawrence, KS 66045, USA.
Andrew C McShanDepartment of Molecular Biosciences, University of Kansas, Lawrence, KS 66045, USA.
Da-Chuan GuoKey Laboratory of Magnetic Resonance in Biological Systems, State Key Laboratory of Magnetic Resonance and Atomic Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan, Hubei Province 430071, China.
Chun TangKey Laboratory of Magnetic Resonance in Biological Systems, State Key Laboratory of Magnetic Resonance and Atomic Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan, Hubei Province 430071, China.
Jorge E GalanDepartment of Microbial Pathogenesis, Yale University School of Medicine, 295 Congress Avenue, New Haven, CT 06536, USA.
Roberto N De GuzmanDepartment of Molecular Biosciences, University of Kansas, Lawrence, KS 66045, USA. Electronic address: rdguzman@ku.edu.

Funding

MOLECULAR GENETIC ANALYSIS OF SALMONELLA CELL INVASIONR37AI030492 · NIAID · YALE UNIVERSITY · PI GALAN, JORGE E · 2000 to 2024
$10.1M
U of Kansas/Haskell Indian Nations U.IRACDA ProjectK12GM063651 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI DE GUZMAN, ROBERTO N · 2002 to 2022
$10.0M
PHARMACEUTICAL ASPECTS OF BIOTECHNOLOGY TRAININGT32GM008359 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI SIAHAAN, TERUNA J., VOLKIN, DAVID · 1989 to 2018
$5.0M
NMR studies of bacterial needle and tip proteinsR01AI074856 · NIAID · UNIVERSITY OF KANSAS LAWRENCE · PI DE GUZMAN, ROBERTO N · 2008 to 2018
$3.6M
MOLECULAR GENETIC ANALYSIS OF SALMONELLA CELL INVASIONR01AI030492 · NIAID · YALE UNIVERSITY · PI Jorge E Galan · 1995 to 2026
$3.1M
MOLECULAR GENETIC ANALYSIS OF SALMONELLA CELL INVASIONR29AI030492 · NIAID · STATE UNIVERSITY NEW YORK STONY BROOK · PI GALAN, JORGE E · 1991 to 1995
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Howard Hughes Medical InstituteNIAID NIH HHS AI030492NIAID NIH HHS AI074856NIAID NIH HHS R01 AI030492NIAID NIH HHS R01 AI074856NIAID NIH HHS R37 AI030492NIGMS NIH HHS K12 GM063651NIGMS NIH HHS T32 GM008359NIGMS NIH HHS T32-GM008359
6 · The paper itself

Abstract

Salmonella and other pathogenic bacteria use the type III secretion system (T3SS) to inject virulence proteins into human cells to initiate infections. The structural component of the T3SS contains a needle and a needle tip. The needle is assembled from PrgI needle protomers and the needle tip is capped with several copies of the SipD tip protein. How a tip protein docks on the needle is unclear. A crystal structure of a PrgI-SipD fusion protein docked on the PrgI needle results in steric clash of SipD at the needle tip when modeled on the recent atomic structure of the needle. Thus, there is currently no good model of how SipD is docked on the PrgI needle tip. Previously, we showed by NMR paramagnetic relaxation enhancement (PRE) methods that a specific region in the SipD coiled coil is the binding site for PrgI. Others have hypothesized that a domain of the tip protein-the N-terminal α-helical hairpin-has to swing away during the assembly of the needle apparatus. Here, we show by PRE methods that a truncated form of SipD lacking the α-helical hairpin domain binds more tightly to PrgI. Further, PRE-based structure calculations revealed multiple PrgI binding sites on the SipD coiled coil. Our PRE results together with the recent NMR-derived atomic structure of the Salmonella needle suggest a possible model of how SipD might dock at the PrgI needle tip. SipD and PrgI are conserved in other bacterial T3SSs; thus, our results have wider implication in understanding other needle-tip complexes.

Indexed as

Nuclear Magnetic Resonance, BiomolecularAntigens, BacterialBacterial ProteinsBacterial Secretion SystemsFluorescence PolarizationHumansMembrane ProteinsModels, MolecularProtein ConformationSalmonella typhimuriumStructure-Activity RelationshipAntigens, BacterialBacterial ProteinsBacterial Secretion SystemsMembrane ProteinsSspD protein, Salmonella typhimuriumNMRPrgISalmonellaSipDtype III secretion

Identifiers

PMID24951833
PMCPMC4108505

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.