Evidence map›Paper›PMID 24951793›Full record

ArticleApplied and environmental microbiology2014

Analysis of strains lacking known osmolyte accumulation mechanisms reveals contributions of osmolytes and transporters to protection against abiotic stress.

Lindsay Murdock, Tangi Burke, Chelsea Coumoundouros, Doreen E Culham, Charles E Deutch, James Ellinger, Craig H Kerr, Samantha M Plater, Eric To, Geordie Wright and 1 more

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Metabolomic Response ofPlants (Basel, Switzerland) · 2024
    Article
  4. Review
  5. Article
  6. Article
  7. Role of Proline in Pathogen and Host Interactions.Antioxidants & redox signaling · 2019
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Bacterial responses to osmotic challenges.The Journal of general physiology · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Lindsay MurdockDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, ON, Canada.
Tangi BurkeDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, ON, Canada.
Chelsea CoumoundourosDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, ON, Canada.
Doreen E CulhamDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, ON, Canada.
Charles E DeutchDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, ON, Canada School of Mathematical and Natural Sciences, Arizona State University at the West Campus, Phoenix, Arizona, USA.
James EllingerDepartment of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Craig H KerrDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, ON, Canada.
Samantha M PlaterDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, ON, Canada.
Eric ToDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, ON, Canada.
Geordie WrightDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, ON, Canada.
Janet M WoodDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, ON, Canada jwood@uoguelph.ca.

Funding

WATER DISTRIB:PHYSICAL PROPERT:PIZZA &LMPS MOZZARELLA CHEESES:EARLY STAGE MATURP41RR002301 · NCRR · UNIVERSITY OF WISCONSIN-MADISON · PI MARKLEY, JOHN LUTE · 1985 to 2011
$13.0M
Cellular Osmoregulation:Sensors, Transducers&RegulatorsR13DK063952 · NIDDK · GORDON RESEARCH CONFERENCES · PI WOOD, JANET M · 2003 to 2003
$11k
GENETIC ANALYSIS OF PLANT ORGANELLE TRANSIT SEQUENCESF32GM010399 · NIGMS · ROCKEFELLER UNIVERSITY · PI SZABO, LESLIE J · 1985 to 1985
–
CIHR 89990-1CIHR MOP-089990NCRR NIH HHS P41 RR002301NCRR NIH HHS P41RR02301NIDDK NIH HHS R13 DK063952NIGMS NIH HHS P41GM10399
6 · The paper itself

Abstract

Osmolyte accumulation and release can protect cells from abiotic stresses. In Escherichia coli, known mechanisms mediate osmotic stress-induced accumulation of K(+) glutamate, trehalose, or zwitterions like glycine betaine. Previous observations suggested that additional osmolyte accumulation mechanisms (OAMs) exist and their impacts may be abiotic stress specific. Derivatives of the uropathogenic strain CFT073 and the laboratory strain MG1655 lacking known OAMs were created. CFT073 grew without osmoprotectants in minimal medium with up to 0.9 M NaCl. CFT073 and its OAM-deficient derivative grew equally well in high- and low-osmolality urine pools. Urine-grown bacteria did not accumulate large amounts of known or novel osmolytes. Thus, CFT073 showed unusual osmotolerance and did not require osmolyte accumulation to grow in urine. Yeast extract and brain heart infusion stimulated growth of the OAM-deficient MG1655 derivative at high salinity. Neither known nor putative osmoprotectants did so. Glutamate and glutamine accumulated after growth with either organic mixture, and no novel osmolytes were detected. MG1655 derivatives retaining individual OAMs were created. Their abilities to mediate osmoprotection were compared at 15°C, 37°C without or with urea, and 42°C. Stress protection was not OAM specific, and variations in osmoprotectant effectiveness were similar under all conditions. Glycine betaine and dimethylsulfoniopropionate (DMSP) were the most effective. Trimethylamine-N-oxide (TMAO) was a weak osmoprotectant and a particularly effective urea protectant. The effectiveness of glycine betaine, TMAO, and proline as osmoprotectants correlated with their preferential exclusion from protein surfaces, not with their propensity to prevent protein denaturation. Thus, their effectiveness as stress protectants correlated with their ability to rehydrate the cytoplasm.

Indexed as

Osmotic PressureStress, PhysiologicalBetaineCulture MediaEscherichia coliMethylaminesProlineSodium ChlorideSulfonium CompoundsTemperatureUreaBetaineCulture MediadimethylpropiothetinMethylaminesProlineSodium ChlorideSulfonium CompoundstrimethyloxamineUrea

Identifiers

PMID24951793
PMCPMC4136119

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.