Evidence map›Paper›PMID 24951787›Full record

ArticleApplied and environmental microbiology2014

Trichoderma atroviride transcriptional regulator Xyr1 supports the induction of systemic resistance in plants.

Barbara Reithner, Astrid R Mach-Aigner, Alfredo Herrera-Estrella, Robert L Mach

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 22 citations in OpenAlex.

  1. Genus-wide analysis ofApplied and environmental microbiology · 2024
    Article
  2. Article
  3. Strain improvement ofFrontiers in microbiology · 2023
    Review
  4. Article
  5. Frontiers in microbiology · 2022
    Review
  6. Frontiers in microbiology · 2019
    Review
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Barbara ReithnerDepartment for Biotechnology and Microbiology, Institute of Chemical Engineering, Vienna University of Technology, Vienna, Austria.
Astrid R Mach-AignerDepartment for Biotechnology and Microbiology, Institute of Chemical Engineering, Vienna University of Technology, Vienna, Austria.
Alfredo Herrera-EstrellaResearch Area Fungal Development and Gene Expression, Laboratorio Nacional de Genómica para la Biodiversidad, Cinvestav Campus Guanajuato, Irapuato, Guanajuato, Mexico.
Robert L MachDepartment for Biotechnology and Microbiology, Institute of Chemical Engineering, Vienna University of Technology, Vienna, Austria robert.mach@tuwien.ac.at.
TU Wien · ATCenter for Research and Advanced Studies of the National Polytechnic Institute · MX

Funding

Austrian Science Fund FWF V 232
6 · The paper itself

Abstract

As a result of a transcriptome-wide analysis of the ascomycete Trichoderma atroviride, mycoparasitism-related genes were identified; of these, 13 genes were further investigated for differential expression. In silico analysis of the upstream regulatory regions of these genes pointed to xylanase regulator 1 (Xyr1) as a putatively involved regulatory protein. Transcript analysis of the xyr1 gene of T. atroviride in confrontation with other fungi allowed us to determine that xyr1 levels increased during mycoparasitism. To gain knowledge about the precise role of Xyr1 in the mycoparasitic process, the corresponding gene was deleted from the T. atroviride genome. This resulted in strong reductions in the transcript levels of axe1 and swo1, which encode accessory cell wall-degrading enzymes considered relevant for mycoparasitism. We also analyzed the role of Xyr1 in the Trichoderma-Arabidopsis interaction, finding that the plant response elicited by T. atroviride is delayed if Xyr1 is missing in the fungus.

Indexed as

ArabidopsisGene DeletionGene Expression ProfilingTranscription FactorsTrichodermaTranscription Factors

Identifiers

PMID24951787
PMCPMC4136121
OpenAlexW2018813430

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.