Evidence map›Paper›PMID 24951785›Full record

ArticleApplied and environmental microbiology2014

The pH-dependent expression of the urease operon in Streptococcus salivarius is mediated by CodY.

Szu-Chuan Huang, Robert A Burne, Yi-Ywan M Chen

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Article
  3. Urease in acetogenicGut microbes · 2025
    Article
  4. Article
  5. Article
  6. Functional Analysis of the Major Pilin Proteins of Type IV Pili inInternational journal of molecular sciences · 2024
    Article
  7. Frontiers in microbiology · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Improvement of Biomineralization ofJournal of microbiology and biotechnology · 2021
    Article
  12. Article
  13. Article
  14. Article
  15. [Construction of a low-pH-sensing system in Streptococcus mutans].Hua xi kou qiang yi xue za zhi = Huaxi kouqiang yixue zazhi = West China journal of stomatology · 2017
    Article
  16. Review
  17. YMC-2011, a Temperate Phage of Streptococcus salivarius 57.I.Applied and environmental microbiology · 2017
    Article
  18. Stress Physiology of Lactic Acid Bacteria.Microbiology and molecular biology reviews : MMBR · 2016
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Szu-Chuan HuangGraduate Institute of Biomedical Sciences, College of Medicine, Chang Gung University, Taoyuan, Taiwan.
Robert A BurneDepartment of Oral Biology, University of Florida, Gainesville, Florida, USA.
Yi-Ywan M ChenDepartment of Microbiology and Immunology, College of Medicine, Chang Gung University, Taoyuan, Taiwan Graduate Institute of Biomedical Sciences, College of Medicine, Chang Gung University, Taoyuan, Taiwan Research Center for Pathogenic Bacteria, College of Medicine, Chang Gung University, Taoyuan, Taiwan mchen@mail.cgu.edu.tw.

Funding

MOLECULAR BIOLOGY OF ORAL UREOLYSISR01DE010362 · NIDCR · UNIVERSITY OF ROCHESTER · PI BURNE, ROBERT A · 1992 to 2010
$2.8M
NIDCR NIH HHS R01 DE010362
6 · The paper itself

Abstract

Urease gene expression in Streptococcus salivarius 57.I, a strain of one of the major alkali producers in the mouth, is induced by acidic pH and excess amounts of carbohydrate. Expression is controlled primarily at the transcriptional level from a promoter, pureI. Recent sequencing analysis revealed a CodY box located 2 bases 5' to the -35 element of pureI. Using continuous chemostat culture, transcription from pureI was shown to be repressed by CodY, and at pH 7 the repression was more pronounced than that in cells grown at pH 5.5 under both 20 and 100 mM glucose. The direct binding of CodY to pureI was demonstrated by electrophoretic mobility shift assay and chromatin immunoprecipitation (ChIP)-quantitative real-time PCR (qPCR). The result of ChIP-qPCR also confirmed that the regulation of CodY is indeed modulated by pH and the binding of CodY at neutral pH is further enhanced by a limited supply of glucose (20 mM). In the absence of CodY, the C-terminal domain of the RNA polymerase (RNAP) α subunit interacted with the AT tracks within the CodY box, indicating that CodY and RNAP compete for the same binding region. Such regulation could ensure optimal urease expression when the enzyme is most required, i.e., at an acidic growth pH with an excess amount of carbon nutrients.

Indexed as

Carbohydrate MetabolismChromatin ImmunoprecipitationDNA, BacterialElectrophoretic Mobility Shift AssayGene Expression ProfilingGene Expression Regulation, BacterialHydrogen-Ion ConcentrationOperonProtein BindingReal-Time Polymerase Chain ReactionRepressor ProteinsStreptococcusUreaseDNA, BacterialRepressor ProteinsUrease

Identifiers

PMID24951785
PMCPMC4136106

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.