Evidence map›Paper›PMID 24951590›Full record

ArticleThe Journal of biological chemistry2014

Dynamic interaction of the sec translocon with the chaperone PpiD.

Ilie Sachelaru, Narcis-Adrian Petriman, Renuka Kudva, Hans-Georg Koch

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Frontiers in microbiology · 2021
    Article
  7. The Dynamic SecYEG Translocon.Frontiers in molecular biosciences · 2021
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Review
  17. Review
  18. Protein export through the bacterial Sec pathway.Nature reviews. Microbiology · 2017
    Review
  19. The Periplasmic Chaperone Network ofFrontiers in microbiology · 2017
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Ilie SachelaruFrom the Institut für Biochemie und Molekularbiologie, ZBMZ, Faculty of Medicine, the Faculty of Biology, and.
Narcis-Adrian PetrimanFrom the Institut für Biochemie und Molekularbiologie, ZBMZ, Faculty of Medicine, the Faculty of Biology, and.
Renuka KudvaFrom the Institut für Biochemie und Molekularbiologie, ZBMZ, Faculty of Medicine, the Faculty of Biology, and the Spemann-Graduate School of Biology and Medicine, Albert-Ludwigs-Universität Freiburg, 79104 Freiburg, Germany.
Hans-Georg KochFrom the Institut für Biochemie und Molekularbiologie, ZBMZ, Faculty of Medicine, the Spemann-Graduate School of Biology and Medicine, Albert-Ludwigs-Universität Freiburg, 79104 Freiburg, Germany Hans-Georg.Koch@biochemie.uni-freiburg.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Sec translocon constitutes a ubiquitous protein transport channel that consists in bacteria of the three core components: SecY, SecE, and SecG. Additional proteins interact with SecYEG during different stages of protein transport. During targeting, SecYEG interacts with SecA, the SRP receptor, or the ribosome. Protein transport into or across the membrane is then facilitated by the interaction of SecYEG with YidC and the SecDFYajC complex. During protein transport, SecYEG is likely to interact also with the protein quality control machinery, but details about this interaction are missing. By in vivo and in vitro site-directed cross-linking, we show here that the periplasmic chaperone PpiD is located in front of the lateral gate of SecY, through which transmembrane domains exit the SecY channel. The strongest contacts were found to helix 2b of SecY. Blue native PAGE analyses verify the presence of a SecYEG-PpiD complex in native Escherichia coli membranes. The PpiD-SecY interaction was not influenced by the addition of SecA and only weakly influenced by binding of nontranslating ribosomes to SecYEG. In contrast, PpiD lost contact to the lateral gate of SecY during membrane protein insertion. These data identify PpiD as an additional and transient subunit of the bacterial SecYEG translocon. The data furthermore demonstrate the highly modular and versatile composition of the Sec translocon, which is probably essential for its ability to transport a wide range of substrates across membranes in bacteria and eukaryotes.

Indexed as

Adenosine TriphosphatasesBacterial ProteinsCryoelectron MicroscopyElectrophoresis, Polyacrylamide GelEscherichia coli ProteinsMembrane Transport ProteinsModels, MolecularPeptidylprolyl IsomeraseProtein BindingProtein TransportSecA ProteinsSEC Translocation ChannelsAdenosine TriphosphatasesBacterial ProteinsEscherichia coli ProteinsMembrane Transport ProteinsPeptidylprolyl IsomerasePpiD protein, E coliSecA ProteinsSEC Translocation ChannelsChaperoneEscherichia coli (E. coli)PeriplasmProtein Cross-linkingProtein Quality ControlProtein SortingProtein Translocation

Identifiers

PMID24951590
PMCPMC4118129

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.