Evidence map›Paper›PMID 24951174›Full record

ArticlePlacenta2014

Banking placental tissue: an optimized collection procedure for genome-wide analysis of nucleic acids.

L M Wolfe, R D Thiagarajan, F Boscolo, V Taché, R L Coleman, J Kim, W K Kwan, J F Loring, M Parast, L C Laurent

Abstract readEvaluation Study
In one paragraph

Article in Placenta, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Determinants of Placental Versus Maternal Preeclampsia.Hypertension (Dallas, Tex. : 1979) · 2026
    Article
  5. Clinical and Molecular Differences of Hypertensive Disorders During Pregnancy.Arteriosclerosis, thrombosis, and vascular biology · 2026
    Article
  6. Article
  7. Review
  8. Article
  9. Time-dependent changes in placental mRNA expression after delivery due to delayed specimen collection.American journal of reproductive immunology (New York, N.Y. : 1989) · 2021
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Time course analysis of RNA quality in placenta preserved by RNAlater or flash freezing.American journal of reproductive immunology (New York, N.Y. : 1989) · 2017
    Article
  17. Environmental epigenetics · 2016
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

L M WolfeDepartment of Reproductive Medicine, University of California San Diego, San Diego, CA 92103, USA.
R D ThiagarajanDepartment of Reproductive Medicine, University of California San Diego, San Diego, CA 92103, USA.
F BoscoloDepartment of Reproductive Medicine, University of California San Diego, San Diego, CA 92103, USA; Department of Chemical Physiology, Center for Regenerative Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA.
V TachéDepartment of Reproductive Medicine, University of California San Diego, San Diego, CA 92103, USA; Department of Obstetrics and Gynecology, Division of Maternal Fetal Medicine, University of California Davis, Sacramento, CA 95817, USA.
R L ColemanDepartment of Chemical Physiology, Center for Regenerative Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA.
J KimDepartment of Pathology, University of California San Diego, San Diego, CA 92103, USA.
W K KwanDepartment of Reproductive Medicine, University of California San Diego, San Diego, CA 92103, USA.
J F LoringDepartment of Chemical Physiology, Center for Regenerative Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA.
M ParastDepartment of Pathology, University of California San Diego, San Diego, CA 92103, USA.
L C LaurentDepartment of Reproductive Medicine, University of California San Diego, San Diego, CA 92103, USA. Electronic address: louise.laurent@gmail.com.

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Kathrin Milbury · 1985 to 2026
$290.8M
UC San Diego Womens Reproductive Health Research ProgramK12HD001259 · NICHD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CYNTHIA GYAMFI-BANNERMAN · 1999 to 2026
$9.1M
Sirt1-PPARgamma signaling in placental development and fetal growth disordersR01HD071100 · NICHD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PARAST, MANA M · 2012 to 2016
$1.6M
NCI NIH HHS P30 CA016672NICHD NIH HHS K12 HD001259NICHD NIH HHS R01 HD071100NICHD NIH HHS R01HD071100
6 · The paper itself

Abstract

introductionBanking of high-quality placental tissue specimens will enable biomarker discovery and molecular studies on diseases involving placental dysfunction. Systematic studies aimed at developing feasible standardized methodology for placental collection in a typical clinical setting are lacking.

methodsTo determine the acceptable timeframe for placental collection, we collected multiple samples from first and third trimester placentas at serial timepoints in a 2-h window after delivery, simultaneously comparing the traditional snap-freeze technique to commercial solutions designed to preserve RNA (RNAlater™), and DNA (DNAgard(®)). The performance of RNAlater for preserving DNA was also tested. Nucleic acid quality was assessed by determining the RNA integrity number (RIN) and genome-wide microarray profiling for gene expression and DNA methylation.

resultsWe found that samples collected in RNAlater had higher and more consistent RINs compared to snap-frozen tissue. Similar RINs were obtained for tissue collected in RNAlater as large (1 cm(3)) and small (∼0.1 cm(3)) pieces. RNAlater appeared to better stabilize the time zero gene expression profile compared to snap-freezing for first trimester placenta. DNA methylation profiles remained quite stable over a 2 h time period after removal of the placenta from the uterus, with DNAgard being superior to other treatments. DISCUSSION AND

conclusionThe collection of placental samples in RNAlater and DNAgard is simple, and eliminates the need for liquid nitrogen or a freezer on-site. Moreover, the quality of the nucleic acids and the resulting data from samples collected in these preservation solutions is higher than samples collected using the snap-freeze method and easier to implement in busy clinical environments.

Indexed as

PlacentaSpecimen HandlingTissue BanksDNA MethylationFemaleGene Expression ProfilingGenome-Wide Association StudyGenomicsHumansPregnancyPregnancy Trimester, FirstPregnancy Trimester, ThirdRNA, MessengerRNA, MessengerDNAgardDNA methylationGene expressionMicroarrayPlacentaRNA integrityRNAlaterSnap-freezing

Identifiers

PMID24951174
PMCPMC4847722

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.