Evidence map›Paper›PMID 24950109›Full record

ArticleThe ISME journal2014

Unveiling microbial activities along the halocline of Thetis, a deep-sea hypersaline anoxic basin.

Maria G Pachiadaki, Michail M Yakimov, Violetta LaCono, Edward Leadbetter, Virginia Edgcomb

Open access · bronzeAbstract read
In one paragraph

Article in The ISME journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.7field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 52 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Maria G PachiadakiWoods Hole Oceanographic Institution, Woods Hole, MA, USA.
Michail M YakimovCNR-Institute for Coastal Marine Environment, Messina, Italy.
Violetta LaConoCNR-Institute for Coastal Marine Environment, Messina, Italy.
Edward LeadbetterWoods Hole Oceanographic Institution, Woods Hole, MA, USA.
Virginia EdgcombWoods Hole Oceanographic Institution, Woods Hole, MA, USA.
Woods Hole Oceanographic Institution · USInstitute for Coastal Marine Environment · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Deep-sea hypersaline anoxic basins (DHABs) in the Eastern Mediterranean Sea are considered some of the most hostile environments on Earth. Little is known about the biochemical adaptations of microorganisms living in these habitats. This first metatranscriptome analysis of DHAB samples provides significant insights into shifts in metabolic activities of microorganisms as physicochemical conditions change from deep Mediterranean sea water to brine. The analysis of Thetis DHAB interface indicates that sulfate reduction occurs in both the upper (7.0-16.3% salinity) and lower (21.4-27.6%) halocline, but that expression of dissimilatory sulfate reductase is reduced in the more hypersaline lower halocline. High dark-carbon assimilation rates in the upper interface coincided with high abundance of transcripts for ribulose 1,5-bisphosphate carboxylase affiliated to sulfur-oxidizing bacteria. In the lower interface, increased expression of genes associated with methane metabolism and osmoregulation is noted. In addition, in this layer, nitrogenase transcripts affiliated to uncultivated putative methanotrophic archaea were detected, implying nitrogen fixation in this anoxic habitat, and providing evidence of linked carbon, nitrogen and sulfur cycles.

Indexed as

ArchaeaBacteriaCarbon CycleEcosystemMediterranean SeaPhylogenySalinitySeawaterTranscriptome

Identifiers

PMID24950109
PMCPMC4260694
OpenAlexW2060177855

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.