ArticleBMC genomics2014
Quantitative proteomics and transcriptomics of potato in response to Phytophthora infestans in compatible and incompatible interactions.
Article in BMC genomics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.
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Who cites it
44 citing papers in PubMed.
- Plant-pathogen interactions: making the case for multi-omics analysis of complex pathosystems.Stress biology · 2025Review
- Beyond salt tolerance: SOS1-13's pivotal role in regulating the immune response toFrontiers in plant science · 2025Article
- Article
- Foliar transcriptomes reveal candidate genes for late blight resistance in cultivars of diploid potatoFrontiers in plant science · 2023Article
- Genome-wide characterization ofFrontiers in plant science · 2023Article
- Dual RNA Sequencing Reveals the Genome-Wide Expression Profiles During the Compatible and Incompatible Interactions BetweenFrontiers in plant science · 2022Article
- CRISPR-Cas9 Targeting of theFrontiers in microbiology · 2022Article
- Leaf Apoplast of Field-Grown Potato Analyzed by Quantitative Proteomics and Activity-Based Protein Profiling.International journal of molecular sciences · 2021Article
- GhKWL1 UpregulatesInternational journal of molecular sciences · 2021Article
- Quantitative Proteomics Reveals the Dynamic Regulation of the Tomato Proteome in Response toInternational journal of molecular sciences · 2021Article
- Comprehensive Time-Series Analysis of the Gene Expression Profile in a Susceptible Cultivar of Tree Tomato (Frontiers in plant science · 2021Article
- Comparative proteomics of three Chinese potato cultivars to improve understanding of potato molecular response to late blight disease.BMC genomics · 2020Article
- Intact salicylic acid signalling is required for potato defence against the necrotrophic fungus Alternaria solani.Plant molecular biology · 2020Article
- Deciphering the Omics of Plant-Microbe Interaction: Perspectives and New Insights.Current genomics · 2020Review
- Linking crop traits to transcriptome differences in a progeny population of tetraploid potato.BMC plant biology · 2020Article
- Comparative Transcriptome Profiling Reveals Compatible and Incompatible Patterns of Potato TowardG3 (Bethesda, Md.) · 2020Article
- Article
- Article
- mRNA transcription profile of potato (Solanum tuberosum L.) exposed to ultrasound during different stages of in vitro plantlet development.Plant molecular biology · 2019Article
- Review
Corrections and comments
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Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundIn order to get global molecular understanding of one of the most important crop diseases worldwide, we investigated compatible and incompatible interactions between Phytophthora infestans and potato (Solanum tuberosum). We used the two most field-resistant potato clones under Swedish growing conditions, which have the greatest known local diversity of P. infestans populations, and a reference compatible cultivar.
resultsQuantitative label-free proteomics of 51 apoplastic secretome samples (PXD000435) in combination with genome-wide transcript analysis by 42 microarrays (E-MTAB-1515) were used to capture changes in protein abundance and gene expression at 6, 24 and 72 hours after inoculation with P. infestans. To aid mass spectrometry analysis we generated cultivar-specific RNA-seq data (E-MTAB-1712), which increased peptide identifications by 17%. Components induced only during incompatible interactions, which are candidates for hypersensitive response initiation, include a Kunitz-like protease inhibitor, transcription factors and an RCR3-like protein. More secreted proteins had lower abundance in the compatible interaction compared to the incompatible interactions. Based on this observation and because the well-characterized effector-target C14 protease follows this pattern, we suggest 40 putative effector targets.
conclusionsIn summary, over 17000 transcripts and 1000 secreted proteins changed in abundance in at least one time point, illustrating the dynamics of plant responses to a hemibiotroph. Half of the differentially abundant proteins showed a corresponding change at the transcript level. Many putative hypersensitive and effector-target proteins were single representatives of large gene families.
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