Evidence map›Paper›PMID 24947819›Full record

ArticleScientific reports2014

Epigenetic regulation by chromatin activation mark H3K4me3 in primate progenitor cells within adult neurogenic niche.

Richard S Sandstrom, Michael R Foret, Douglas A Grow, Eric Haugen, Christopher T Rhodes, Astrid E Cardona, Clyde F Phelix, Yufeng Wang, Mitchel S Berger, Chin-Hsing Annie Lin

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it, 29 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Review
  5. Article
  6. Epigenetic Regulation ofInternational journal of molecular sciences · 2020
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  15. Changes in Methionine Metabolism and Histone H3 Trimethylation Are Linked to Mitochondrial Defects in Multiple Sclerosis.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2015
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Richard S SandstromDepartment of Genome Sciences, University of Washington, 1705 NE Pacific Street, Seattle, WA 98195, USA.
Michael R ForetDepartment of Biology, University of Texas at San Antonio, One UTSA Circle, San Antonio, Texas 78249, USA.
Douglas A Grow1] Department of Biology, University of Texas at San Antonio, One UTSA Circle, San Antonio, Texas 78249, USA [2] Neuroscience Institute, University of Texas at San Antonio, San Antonio, Texas 78249, USA.
Eric HaugenDepartment of Genome Sciences, University of Washington, 1705 NE Pacific Street, Seattle, WA 98195, USA.
Christopher T RhodesDepartment of Biology, University of Texas at San Antonio, One UTSA Circle, San Antonio, Texas 78249, USA.
Astrid E CardonaDepartment of Biology, University of Texas at San Antonio, One UTSA Circle, San Antonio, Texas 78249, USA.
Clyde F PhelixDepartment of Biology, University of Texas at San Antonio, One UTSA Circle, San Antonio, Texas 78249, USA.
Yufeng WangDepartment of Biology, University of Texas at San Antonio, One UTSA Circle, San Antonio, Texas 78249, USA.
Mitchel S BergerDepartment of Neurological Surgery, University of California at San Francisco, San Francisco, California 94143, USA.
Chin-Hsing Annie Lin1] Department of Biology, University of Texas at San Antonio, One UTSA Circle, San Antonio, Texas 78249, USA [2] Neuroscience Institute, University of Texas at San Antonio, San Antonio, Texas 78249, USA.
The University of Texas at San Antonio · USUniversity of Washington · USNeurological Surgery · US

Funding

The Southwest National Primate Research Center Supplement- Infrastructure improvements of ABSL2 holding areasP51OD011133 · OD · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI Larry S. Schlesinger · 2012 to 2026
$129.7M
WNV REPLIVAX VACCINE IN NON-HUMAN PRIMATESP51RR013986 · NCRR · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI GAUDUIN, MARIE-CLAIRE ELISABETH · 1999 to 2011
$79.1M
Tissue CoreP50CA097257 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Joseph F Costello · 2002 to 2026
$57.4M
RCMI Center for Interdiscplinary Health Research CIHRG12MD007591 · NIMHD · UNIVERSITY OF TEXAS SAN ANTONIO · PI PERRY, GEORGE · 2012 to 2016
$10.4M
Systems Biology of Plasmodium falciparum: Building and Exploring Network ModelsSC1GM100806 · NIGMS · UNIVERSITY OF TEXAS SAN ANTONIO · PI WANG, YUFENG · 2012 to 2015
$1.5M
Systems Biology of Plasmodium falciparum: Building and Exploring Network ModelsSC1AI080579 · NIAID · UNIVERSITY OF TEXAS SAN ANTONIO · PI WANG, YUFENG · 2008 to 2011
$962k
Recruitment of New Stem Cell BiologistP30GM092334 · NIGMS · UNIVERSITY OF TEXAS SAN ANTONIO · PI MCCARREY, JOHN R · 2009 to 2010
$634k
Systems Biology of Plasmodium falciparum: Building and Exploring Network ModelsSC1GM081068 · NIGMS · UNIVERSITY OF TEXAS SAN ANTONIO · PI WANG, YUFENG · 2007 to 2007
$248k
NCI NIH HHS 5 P50 CA097257-10NCI NIH HHS P50 CA097257NCRR NIH HHS P51 RR013986NIAID NIH HHS AI080579NIAID NIH HHS SC1 AI080579NIGMS NIH HHS 5P30GM092334NIGMS NIH HHS GM100806NIGMS NIH HHS P30 GM092334NIGMS NIH HHS SC1 GM081068NIGMS NIH HHS SC1 GM100806NIH HHS OD P51 OD011133NIH HHS P51 OD011133NIMHD NIH HHS G12 MD007591NIMHD NIH HHS G12MD007591
6 · The paper itself

Abstract

Histone 3 lysine 4 trimethylation (H3K4me3) is known to be associated with transcriptionally active or poised genes and required for postnatal neurogenesis within the subventricular zone (SVZ) in the rodent model. Previous comparisons have shown significant correlation between baboon (Papio anubis) and human brain. In this study, we demonstrate that chromatin activation mark H3K4me3 is present in undifferentiated progenitor cells within the SVZ of adult baboon brain. To identify the targets and regulatory role of H3K4me3 within the baboon SVZ, we developed a technique to purify undifferentiated SVZ cells while preserving the endogenous nature without introducing culture artifact to maintain the in vivo chromatin state for genome-wide studies (ChIP-Seq and RNA-Seq). Overall, H3K4me3 is significantly enriched for genes involved in cell cycle, metabolism, protein synthesis, signaling pathways, and cancer mechanisms. Additionally, we found elevated levels of H3K4me3 in the MRI-classified SVZ-associated Glioblastoma Multiforme (GBM), which has a transcriptional profile that reflects the H3K4me3 modifications in the undifferentiated progenitor cells of the baboon SVZ. Our findings highlight the importance of H3K4me3 in coordinating distinct networks and pathways for life-long neurogenesis, and suggest that subtypes of GBM could occur, at least in part, due to aberrant H3K4me3 epigenetic regulation.

Indexed as

Adult Stem CellsAnimalsCells, CulturedChromatinEpigenesis, GeneticGene Expression RegulationGenetic MarkersHistonesLateral VentriclesNeural Stem CellsNeurogenesisPapio anubisStem Cell NicheTranscriptional ActivationChromatinGenetic MarkersHistones

Identifiers

PMID24947819
PMCPMC4064326
OpenAlexW2065739299

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.