Evidence map›Paper›PMID 24947516›Full record

ArticleThe Journal of biological chemistry2014

Multiple interactions of the intrinsically disordered region between the helicase and nuclease domains of the archaeal Hef protein.

Sonoko Ishino, Takeshi Yamagami, Makoto Kitamura, Noriyuki Kodera, Tetsuya Mori, Shyogo Sugiyama, Toshio Ando, Natsuko Goda, Takeshi Tenno, Hidekazu Hiroaki and 1 more

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
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  9. Open biology · 2020
    Review
  10. Article
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  13. Article
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  16. Article
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  18. Review
  19. An optimized NIntrinsically disordered proteins · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Sonoko IshinoFrom the Department of Bioscience and Biotechnology, Graduate School of Bioresource and Bioenvironmental Sciences, and Faculty of Agriculture, Kyushu University, Fukuoka 812-8581.
Takeshi YamagamiFrom the Department of Bioscience and Biotechnology, Graduate School of Bioresource and Bioenvironmental Sciences, and Faculty of Agriculture, Kyushu University, Fukuoka 812-8581.
Makoto KitamuraFrom the Department of Bioscience and Biotechnology, Graduate School of Bioresource and Bioenvironmental Sciences, and Faculty of Agriculture, Kyushu University, Fukuoka 812-8581.
Noriyuki Koderathe Bio-AFM Frontier Research Center and Department of Physics, College of Science and Engineering, Kanazawa University, Kanazawa 920-1192, and.
Tetsuya Morithe Bio-AFM Frontier Research Center and Department of Physics, College of Science and Engineering, Kanazawa University, Kanazawa 920-1192, and.
Shyogo Sugiyamathe Bio-AFM Frontier Research Center and Department of Physics, College of Science and Engineering, Kanazawa University, Kanazawa 920-1192, and.
Toshio Andothe Bio-AFM Frontier Research Center and Department of Physics, College of Science and Engineering, Kanazawa University, Kanazawa 920-1192, and.
Natsuko Godathe Graduate School of Pharmaceutical Sciences, Nagoya University, Nagoya 464-8601, Japan.
Takeshi Tennothe Graduate School of Pharmaceutical Sciences, Nagoya University, Nagoya 464-8601, Japan.
Hidekazu Hiroakithe Graduate School of Pharmaceutical Sciences, Nagoya University, Nagoya 464-8601, Japan.
Yoshizumi IshinoFrom the Department of Bioscience and Biotechnology, Graduate School of Bioresource and Bioenvironmental Sciences, and Faculty of Agriculture, Kyushu University, Fukuoka 812-8581, ishino@agr.kyushu-u.ac.jp.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hef is an archaeal protein that probably functions mainly in stalled replication fork repair. The presence of an unstructured region was predicted between the two distinct domains of the Hef protein. We analyzed the interdomain region of Thermococcus kodakarensis Hef and demonstrated its disordered structure by CD, NMR, and high speed atomic force microscopy (AFM). To investigate the functions of this intrinsically disordered region (IDR), we screened for proteins interacting with the IDR of Hef by a yeast two-hybrid method, and 10 candidate proteins were obtained. We found that PCNA1 and a RecJ-like protein specifically bind to the IDR in vitro. These results suggested that the Hef protein interacts with several different proteins that work together in the pathways downstream from stalled replication fork repair by converting the IDR structure depending on the partner protein.

Indexed as

Archaeal ProteinsBase SequenceCircular DichroismDNA HelicasesDNA PrimersDNA RepairEndonucleasesIntrinsically Disordered ProteinsMicroscopy, Atomic ForceNuclear Magnetic Resonance, BiomolecularPolymerase Chain ReactionProtein BindingThermococcusTwo-Hybrid System TechniquesArchaeal ProteinsDNA HelicasesDNA PrimersEndonucleasesIntrinsically Disordered ProteinsArchaeaDNA RepairDNA ReplicationExtremophilesFancni AnemiaIntrinsically Disordered ProteinProtein-Protein InteractionStalled Replication Fork

Identifiers

PMID24947516
PMCPMC4118122

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.