Evidence map›Paper›PMID 24947507›Full record

ArticleThe Journal of biological chemistry2014

Evidence supporting the 19 β-strand model for Tom40 from cysteine scanning and protease site accessibility studies.

Sebastian W K Lackey, Rebecca D Taylor, Nancy E Go, Annie Wong, E Laura Sherman, Frank E Nargang

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Sebastian W K LackeyFrom the Department of Biological Sciences, University of Alberta, Edmonton, Alberta T6G 2E9, Canada.
Rebecca D TaylorFrom the Department of Biological Sciences, University of Alberta, Edmonton, Alberta T6G 2E9, Canada.
Nancy E GoFrom the Department of Biological Sciences, University of Alberta, Edmonton, Alberta T6G 2E9, Canada.
Annie WongFrom the Department of Biological Sciences, University of Alberta, Edmonton, Alberta T6G 2E9, Canada.
E Laura ShermanFrom the Department of Biological Sciences, University of Alberta, Edmonton, Alberta T6G 2E9, Canada.
Frank E NargangFrom the Department of Biological Sciences, University of Alberta, Edmonton, Alberta T6G 2E9, Canada frank.nargang@ualberta.ca.
University of Alberta · CA

Funding

Canadian Institutes of Health Research
6 · The paper itself

Abstract

Most proteins found in mitochondria are translated in the cytosol and enter the organelle via the TOM complex (translocase of the outer mitochondrial membrane). Tom40 is the pore forming component of the complex. Although the three-dimensional structure of Tom40 has not been determined, the structure of porin, a related protein, has been shown to be a β-barrel containing 19 membrane spanning β-strands and an N-terminal α-helical region. The evolutionary relationship between the two proteins has allowed modeling of Tom40 into a similar structure by several laboratories. However, it has been suggested that the 19-strand porin structure does not represent the native form of the protein. If true, modeling of Tom40 based on the porin structure would also be invalid. We have used substituted cysteine accessibility mapping to identify several potential β-strands in the Tom40 protein in isolated mitochondria. These data, together with protease accessibility studies, support the 19 β-strand model for Tom40 with the C-terminal end of the protein localized to the intermembrane space.

Indexed as

Models, MolecularAmino Acid SequenceBinding SitesCysteineFungal ProteinsMitochondrial Membrane Transport ProteinsMolecular Sequence DataNeurospora crassaPeptide HydrolasesSequence Homology, Amino AcidCysteineFungal ProteinsMitochondrial Membrane Transport ProteinsPeptide HydrolasesMembrane ProteinMitochondriaNeurosporaProtein StructureSCAMTom40Transmembrane Domainβ-Barrel Protein

Identifiers

PMID24947507
PMCPMC4118123
OpenAlexW2023399502

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.