Evidence map›Paper›PMID 24947454›Full record

ArticleNature communications2014

Nitrogen stress response and stringent response are coupled in Escherichia coli.

Daniel R Brown, Geraint Barton, Zhensheng Pan, Martin Buck, Sivaramesh Wigneshweraraj

Open access · hybridAbstract read
In one paragraph

Article in Nature communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 104 papers.

0numbers the graph read from it
0cells of the map it votes in
104citing papers in PubMed
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

104 citing papers in PubMed, 179 citations in OpenAlex.

  1. Global proteolysis during starvation governs proteome remodeling and a survival-regrowth trade-off in bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2026
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44 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Daniel R BrownMRC Centre for Molecular Bacteriology and Infection, Imperial College London, London SW7 2AZ, UK.
Geraint BartonCentre for Systems Biology and Bioinformatics, Division of Biosciences, Imperial College London, London SW7 2AZ, UK.
Zhensheng PanMRC Centre for Molecular Bacteriology and Infection, Imperial College London, London SW7 2AZ, UK.
Martin BuckDepartment of Life Sciences, Imperial College London, London SW7 2AZ, UK.
Sivaramesh WigneshwerarajMRC Centre for Molecular Bacteriology and Infection, Imperial College London, London SW7 2AZ, UK.
Imperial College London · GB

Funding

Biotechnology and Biological Sciences Research Council BB/G020434/1Medical Research Council MR/J006874/1Wellcome Trust 100958
6 · The paper itself

Abstract

Assimilation of nitrogen is an essential process in bacteria. The nitrogen regulation stress response is an adaptive mechanism used by nitrogen-starved Escherichia coli to scavenge for alternative nitrogen sources and requires the global transcriptional regulator NtrC. In addition, nitrogen-starved E. coli cells synthesize a signal molecule, guanosine tetraphosphate (ppGpp), which serves as an effector molecule of many processes including transcription to initiate global physiological changes, collectively termed the stringent response. The regulatory mechanisms leading to elevated ppGpp levels during nutritional stresses remain elusive. Here, we show that transcription of relA, a key gene responsible for the synthesis of ppGpp, is activated by NtrC during nitrogen starvation. The results reveal that NtrC couples these two major bacterial stress responses to manage conditions of nitrogen limitation, and provide novel mechanistic insights into how a specific nutritional stress leads to elevating ppGpp levels in bacteria.

Indexed as

Binding SitesChromatin ImmunoprecipitationElectrophoretic Mobility Shift AssayEscherichia coliEscherichia coli ProteinsGuanosine TetraphosphateHigh-Throughput Nucleotide SequencingLigasesNitrogenPII Nitrogen Regulatory ProteinsReal-Time Polymerase Chain ReactionStress, PhysiologicalTranscription FactorsEscherichia coli ProteinsglnG protein, E coliguanosine 3',5'-polyphosphate synthetasesGuanosine TetraphosphateLigasesNitrogenPII Nitrogen Regulatory ProteinsTranscription Factors

Identifiers

PMID24947454
PMCPMC4066584
OpenAlexW2053712365

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.