Evidence map›Paper›PMID 24946903›Full record

ArticleThe Biochemical journal2014

A single element in the 3'UTR of the apical sodium-dependent bile acid transporter controls both stabilization and destabilization of mRNA.

Dellys M Soler, Ayantika Ghosh, Frank Chen, Benjamin L Shneider

Open access · greenAbstract read
In one paragraph

Article in The Biochemical journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Organic Solute Transporter α-β Protects Ileal Enterocytes From Bile Acid-Induced Injury.Cellular and molecular gastroenterology and hepatology · 2018
    Article
  3. Article
  4. Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Dellys M Soler*Department of Pediatrics, University of Pittsburgh School of Medicine, Pittsburgh, PA 15224, U.S.A.
Ayantika Ghosh*Department of Pediatrics, University of Pittsburgh School of Medicine, Pittsburgh, PA 15224, U.S.A.
Frank Chen*Department of Pediatrics, University of Pittsburgh School of Medicine, Pittsburgh, PA 15224, U.S.A.
Benjamin L Shneider*Department of Pediatrics, University of Pittsburgh School of Medicine, Pittsburgh, PA 15224, U.S.A.
University of Pittsburgh · US

Funding

MOLECULAR REGULATION OF ILEAL/RENAL BILE ACID TRANSPORTR01DK054165 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SHNEIDER, BENJAMIN L · 1997 to 2012
$2.8M
NIDDK NIH HHS DK054165NIDDK NIH HHS R01 DK054165
6 · The paper itself

Abstract

mRNA stability appears to play a key role in the ontogenic regulation of the apical sodium-dependent bile acid transporter (ASBT). The RNA-binding proteins Hu antigen R (HuR) and tristetraprolin (TTP) stabilize and destabilize ASBT mRNA, respectively. Potential HuR-binding sites were assessed by sequence analysis in the context of prior in vitro functional analyses of the rat ASBT 3'UTR. Wild-type and mutant-binding sites were investigated by gel-shift analysis using IEC-6 cell extracts. The functional consequences of binding site mutations were assessed using two different hybrid reporter constructs linking the 3'UTR element to either a luciferase or a β-globin coding mRNA sequence. A specific metastasis-associated gene 1 (MTA1) cis-element was identified in the ASBT 3'UTR that became associated with proteins in IEC-6 cell extracts and could be supershifted by anti-HuR or anti-TTP antibodies. Mutation of this cis-element abrogated the gel shift of IEC-6 proteins. Furthermore, hybrid constructs containing a mutant MTA1 element had reduced responses to modulation of HuR or TTP. For the first time, we have identified a single specific sequence element in the 3'UTR of the rat ASBT mRNA that mediates counter-regulatory changes in mRNA abundance in response to both HuR and TTP.

Indexed as

3' Untranslated RegionsAnimalsBinding SitesELAV ProteinsElectrophoretic Mobility Shift AssayGene Expression RegulationOrganic Anion Transporters, Sodium-DependentProteinsRatsRNA-Binding ProteinsRNA, MessengerRNA StabilitySymportersTristetraprolin3' Untranslated RegionsELAV ProteinsMta1 protein, ratOrganic Anion Transporters, Sodium-DependentProteinsRNA-Binding ProteinsRNA, Messengersodium-bile acid cotransporterSymportersTristetraprolin

Identifiers

PMID24946903
PMCPMC5338459
OpenAlexW2000393872

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.