Evidence map›Paper›PMID 24945527›Full record

ArticlePLoS pathogens2014

Ubiquitin-mediated response to microsporidia and virus infection in C. elegans.

Malina A Bakowski, Christopher A Desjardins, Margery G Smelkinson, Tiffany L Dunbar, Tiffany A Dunbar, Isaac F Lopez-Moyado, Scott A Rifkin, Christina A Cuomo, Emily R Troemel

Erratum issuedAbstract read
In one paragraph

Article in PLoS pathogens, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 155 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
155citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

155 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  20. The interplay betweeniScience · 2025
    Article

95 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
    Dunbar, Tiffany A [corrected to Dunbar, Tiffany L]
5 · Who and what money

Authors and funding

9 authors.

Malina A BakowskiDivision of Biological Sciences, Section of Cell and Developmental Biology, University of California San Diego, La Jolla, California, United States of America.
Christopher A DesjardinsThe Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Margery G SmelkinsonDivision of Biological Sciences, Section of Cell and Developmental Biology, University of California San Diego, La Jolla, California, United States of America.
Tiffany L Dunbar
Tiffany A DunbarDivision of Biological Sciences, Section of Cell and Developmental Biology, University of California San Diego, La Jolla, California, United States of America.
Isaac F Lopez-MoyadoBioinformatics and Systems Biology Graduate Program, University of California San Diego, La Jolla, California, United States of America.
Scott A RifkinBioinformatics and Systems Biology Graduate Program, University of California San Diego, La Jolla, California, United States of America; Division of Biological Sciences, Section of Ecology, Behavior, and Evolution University of California San Diego, La Jolla, California, United States of America.
Christina A CuomoThe Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Emily R TroemelDivision of Biological Sciences, Section of Cell and Developmental Biology, University of California San Diego, La Jolla, California, United States of America.

Funding

VirologyP30AI036214 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Maile Ann Young Karris · 1994 to 2026
$78.4M
Viral Genomics: evolution, spread, and host interactionsU19AI110818 · NIAID · BROAD INSTITUTE, INC. · PI CUOMO, CHRISTINA A · 2014 to 2024
$66.5M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
A natural host model for microsporidia pathogenesis in the intestineR01AI087528 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TROEMEL, EMILY R · 2010 to 2014
$1.9M
NIAID NIH HHS HHSN272200900018CNIAID NIH HHS P30 AI036214NIAID NIH HHS R01 AI087528NIAID NIH HHS U19 AI110818NIH HHS P40 OD010440
6 · The paper itself

Abstract

Microsporidia comprise a phylum of over 1400 species of obligate intracellular pathogens that can infect almost all animals, but little is known about the host response to these parasites. Here we use the whole-animal host C. elegans to show an in vivo role for ubiquitin-mediated response to the microsporidian species Nematocida parisii, as well to the Orsay virus, another natural intracellular pathogen of C. elegans. We analyze gene expression of C. elegans in response to N. parisii, and find that it is similar to response to viral infection. Notably, we find an upregulation of SCF ubiquitin ligase components, such as the cullin ortholog cul-6, which we show is important for ubiquitin targeting of N. parisii cells in the intestine. We show that ubiquitylation components, the proteasome, and the autophagy pathway are all important for defense against N. parisii infection. We also find that SCF ligase components like cul-6 promote defense against viral infection, where they have a more robust role than against N. parisii infection. This difference may be due to suppression of the host ubiquitylation system by N. parisii: when N. parisii is crippled by anti-microsporidia drugs, the host can more effectively target pathogen cells for ubiquitylation. Intriguingly, inhibition of the ubiquitin-proteasome system (UPS) increases expression of infection-upregulated SCF ligase components, indicating that a trigger for transcriptional response to intracellular infection by N. parisii and virus may be perturbation of the UPS. Altogether, our results demonstrate an in vivo role for ubiquitin-mediated defense against microsporidian and viral infections in C. elegans.

Indexed as

AnimalsAutophagyBase SequenceCaenorhabditis elegansCaenorhabditis elegans ProteinsCullin ProteinsHost-Pathogen InteractionsMicrosporidiaRNA InterferenceRNA, Small InterferingSequence Analysis, RNASKP Cullin F-Box Protein LigasesTranscription, GeneticUbiquitinUbiquitinationCaenorhabditis elegans ProteinsCUL-6 protein, C elegansCullin ProteinsRNA, Small InterferingSKP Cullin F-Box Protein LigasesUbiquitin

Identifiers

PMID24945527
PMCPMC4063957

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.