Evidence map›Paper›PMID 24944578›Full record

ArticleBiotechnology for biofuels2014

Overcoming inefficient cellobiose fermentation by cellobiose phosphorylase in the presence of xylose.

Kulika Chomvong, Vesna Kordić, Xin Li, Stefan Bauer, Abigail E Gillespie, Suk-Jin Ha, Eun Joong Oh, Jonathan M Galazka, Yong-Su Jin, Jamie H D Cate

Open access · goldAbstract read
In one paragraph

Article in Biotechnology for biofuels, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 33 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Kulika ChomvongDepartment of Plant and Microbial Biology, University of California, Berkeley, CA, USA.
Vesna KordićDepartment of Chemistry, University of California, Berkeley, CA, USA.
Xin LiDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.
Stefan BauerEnergy Biosciences Institute, University of California, Berkeley, CA, USA.
Abigail E GillespieDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.
Suk-Jin HaDepartment of Food Science and Human Nutrition, University of Illinois, Urbana, IL, USA ; Institute for Genomic Biology, University of Illinois, Urbana, IL, USA ; Department of Bioengineering and Technology, Kangwon National University, Chuncheon, Republic of Korea.
Eun Joong OhDepartment of Food Science and Human Nutrition, University of Illinois, Urbana, IL, USA ; Institute for Genomic Biology, University of Illinois, Urbana, IL, USA.
Jonathan M GalazkaDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.
Yong-Su JinDepartment of Food Science and Human Nutrition, University of Illinois, Urbana, IL, USA ; Institute for Genomic Biology, University of Illinois, Urbana, IL, USA.
Jamie H D CateDepartment of Chemistry, University of California, Berkeley, CA, USA ; Department of Molecular and Cell Biology, University of California, Berkeley, CA, USA ; Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
University of California, Berkeley · USUniversity of Illinois Urbana-Champaign · USEnergy Biosciences Institute · US

Funding

Univ of Calif Berkeley Chemistry-Biology Interface ProgramT32GM066698 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI CHANG, CHRISTOPHER J., FRANCIS, MATTHEW B · 2004 to 2023
$7.5M
NIGMS NIH HHS T32 GM066698
6 · The paper itself

Abstract

backgroundCellobiose and xylose co-fermentation holds promise for efficiently producing biofuels from plant biomass. Cellobiose phosphorylase (CBP), an intracellular enzyme generally found in anaerobic bacteria, cleaves cellobiose to glucose and glucose-1-phosphate, providing energetic advantages under the anaerobic conditions required for large-scale biofuel production. However, the efficiency of CBP to cleave cellobiose in the presence of xylose is unknown. This study investigated the effect of xylose on anaerobic CBP-mediated cellobiose fermentation by Saccharomyces cerevisiae.

resultsYeast capable of fermenting cellobiose by the CBP pathway consumed cellobiose and produced ethanol at rates 61% and 42% slower, respectively, in the presence of xylose than in its absence. The system generated significant amounts of the byproduct 4-O-β-d-glucopyranosyl-d-xylose (GX), produced by CBP from glucose-1-phosphate and xylose. In vitro competition assays identified xylose as a mixed-inhibitor for cellobiose phosphorylase activity. The negative effects of xylose were effectively relieved by efficient cellobiose and xylose co-utilization. GX was also shown to be a substrate for cleavage by an intracellular β-glucosidase.

conclusionsXylose exerted negative impacts on CBP-mediated cellobiose fermentation by acting as a substrate for GX byproduct formation and a mixed-inhibitor for cellobiose phosphorylase activity. Future efforts will require efficient xylose utilization, GX cleavage by a β-glucosidase, and/or a CBP with improved substrate specificity to overcome the negative impacts of xylose on CBP in cellobiose and xylose co-fermentation.

Indexed as

CellobioseCellobiose phosphorylaseGlucopyranosyl-xyloseInhibitionXylose

Identifiers

PMID24944578
PMCPMC4061319
OpenAlexW2118214193

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.