Evidence map›Paper›PMID 24944161›Full record

ArticleMolecular human reproduction2014

Genome-wide hypermethylation coupled with promoter hypomethylation in the chorioamniotic membranes of early onset pre-eclampsia.

Travers Ching, Min-Ae Song, Maarit Tiirikainen, Janos Molnar, Marla Berry, Dena Towner, Lana X Garmire

Open access · bronzeAbstract read
In one paragraph

Article in Molecular human reproduction, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed, 4 pooled it
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 4 syntheses or guidelines pooled it, 73 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
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  4. Pooled it
  5. Trial
  6. Trial
  7. Article
  8. Article
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  10. Programming of the respiratory epitheliummedRxiv : the preprint server for health sciences · 2025
    Article
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  19. Aberrant Methylation of theReports of biochemistry & molecular biology · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Travers ChingMolecular Bioscience and Bioengineering Graduate Program, University of Hawaii at Manoa, Honolulu, HI 96822, USA Epidemiology Program, University of Hawaii Cancer Center, Honolulu, HI 96813, USA.
Min-Ae SongMolecular Bioscience and Bioengineering Graduate Program, University of Hawaii at Manoa, Honolulu, HI 96822, USA Genomics Shared Resources Core, University of Hawaii Cancer Center, Honolulu, HI 96813, USA.
Maarit TiirikainenGenomics Shared Resources Core, University of Hawaii Cancer Center, Honolulu, HI 96813, USA.
Janos MolnarGenomics Shared Resources Core, University of Hawaii Cancer Center, Honolulu, HI 96813, USA.
Marla BerryDepartment of Cell and Molecular Biology, John A. Burns School of Medicine, University of Hawaii, Honolulu, HI 96813, USA mberry@hawaii.edu towner@hawaii.edu lgarmire@cc.hawaii.edu.
Dena TownerDepartment of Obstetrics, Gynecology and Women's Health, John A. Burns School of Medicine, University of Hawaii, Honolulu, HI 96826, USA mberry@hawaii.edu towner@hawaii.edu lgarmire@cc.hawaii.edu.
Lana X GarmireMolecular Bioscience and Bioengineering Graduate Program, University of Hawaii at Manoa, Honolulu, HI 96822, USA Epidemiology Program, University of Hawaii Cancer Center, Honolulu, HI 96813, USA mberry@hawaii.edu towner@hawaii.edu lgarmire@cc.hawaii.edu.
University of Hawaii System · USUniversity of Hawaiʻi at Mānoa · USUniversity of Hawaii Cancer Center

Funding

University of Hawaii Cancer Center CCSGP30CA071789 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI Xin Chen · 1996 to 2026
$56.2M
RESEARCH DESIGN, BIOSTATISTICS AND RESEARCH ETHICS COREG12MD007601 · NIMHD · UNIVERSITY OF HAWAII AT MANOA · PI BERRY, MARLA J · 2012 to 2016
$13.0M
Transgenic Mouse, ICSI and IVF CoreP20GM103457 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI WARD, WILLIAM S · 2012 to 2018
$12.9M
MECHANISM OF SELENOPROTEIN SYNTHESIS IN EUKARYOTESR01DK047320 · NIDDK · UNIVERSITY OF HAWAII AT MANOA · PI BERRY, MARLA J · 1994 to 2020
$5.8M
NCI NIH HHS P30 CA071789NIDDK NIH HHS R01 DK47320NIGMS NIH HHS P20 GM103457NIMHD NIH HHS G12 MD007601
6 · The paper itself

Abstract

Pre-eclampsia is the leading cause of fetal and maternal morbidity and mortality. Early onset pre-eclampsia (EOPE) is a disorder that has severe maternal and fetal outcomes, whilst its etiology is poorly understood. We hypothesize that epigenetics plays an important role to mediate the development of EOPE and conducted a case-control study to compare the genome-wide methylome difference between chorioamniotic membranes from 30 EOPE and 17 full-term pregnancies using the Infinium Human Methylation 450 BeadChip arrays. Bioinformatics analysis tested differential methylation (DM) at CpG site level, gene level, and pathway and network level. A striking genome-wide hypermethylation pattern coupled with hypomethylation in promoters was observed. Out of 385 184 CpG sites, 9995 showed DM (2.6%). Of those DM sites, 91.9% showed hypermethylation (9186 of 9995). Over 900 genes had DM associated with promoters. Promoter-based DM analysis revealed that genes in canonical cancer-related pathways such as Rac, Ras, PI3K/Akt, NFκB and ErBB4 were enriched, and represented biological functional alterations that involve cell cycle, apoptosis, cancer signaling and inflammation. A group of genes previously found to be up-regulated in pre-eclampsia, including GRB2, ATF3, NFKB2, as well as genes in proteasome subunits (PSMA1, PMSE1, PSMD1 and PMSD8), harbored hypomethylated promoters. Contrarily, a cluster of microRNAs, including mir-519a1, mir-301a, mir-487a, mir-185, mir-329, mir-194, mir-376a1, mir-486 and mir-744 were all hypermethylated in their promoters in the EOPE samples. These findings collectively reveal new avenues of research regarding the vast epigenetic modifications in EOPE.

Indexed as

DNA MethylationEpigenesis, GeneticPromoter Regions, GeneticAdultAmnionCase-Control StudiesChorionComputational BiologyDNADown-RegulationFemaleGenome-Wide Association StudyHumansMicroRNAsOligonucleotide Array Sequence AnalysisPre-EclampsiaDNAMicroRNAsbioinformaticschorioamniotic membranesDNA methylationepigeneticspre-eclampsia

Identifiers

PMID24944161
PMCPMC4131767
OpenAlexW2156334030

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.