Evidence map›Paper›PMID 24944091›Full record

ArticleJournal of molecular modeling2014

Modeling bacterial quorum sensing in open and closed environments: potential discrepancies between agar plate and culture flask experiments.

Dóra Bihary, Marietta Tóth, Ádám Kerényi, Vittorio Venturi, Sándor Pongor

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Journal of molecular modeling, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Communication within East Antarctic Soil Bacteria.Applied and environmental microbiology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Dóra BiharyPázmány Péter Catholic University, 1083, Budapest, Hungary.
Marietta Tóth
Ádám Kerényi
Vittorio Venturi
Sándor Pongor

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Quorum sensing (QS) is a process of bacterial communication and cooperation mediated by the release of jointly exploited signals and "public goods" into the environment. There are conflicting reports on the behavior of mutants deficient in the release of these materials. Namely, mutants that appear perfectly viable and capable of outgrowing wild type cells in a closed model system such as a culture flask, may not be viable or invasive on open surfaces such as agar plates. Here we show via agent-based computational simulations that this apparent discrepancy is due to the difference between open and closed systems. We suggest that the experimental difference is due to the fact that wild type cells can easily saturate a well-mixed culture flask with signals and public goods so QS will be not necessary after a certain time point. As a consequence, QS-deficient mutants can continue to grow even after the wild type population has vanished. This phenomenon is not likely to occur in open environments including open surfaces and agar plate models. In other words, even if QS is required for survival, QS deficient mutants may grow faster initially in short term laboratory experiments or computer simulations, while only WT cells appear stable over longer time scales, especially when adaptation to changing environments is important.

Indexed as

Bacteriological TechniquesModels, BiologicalQuorum SensingAgarBacterial ProteinsComputer SimulationGenotypeMicrobial ViabilityMutationPhenotypePseudomonas aeruginosaRepressor ProteinsTime FactorsTrans-ActivatorsAgarBacterial ProteinsLuxR autoinducer binding proteinsRepressor ProteinsTrans-Activators

Identifiers

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.